Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20734300 [ AET2Gv20734300] |
2D | 415289567 | 415297648 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20734300.11 AET2Gv20734300.11 |
Low | No | 418 | OG0070797 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -32.847 AMFE: -0.509 GC content %: 64.593 | |
Atauschii_AET2Gv20734300.8 AET2Gv20734300.8 |
Low | No | 745 | OG0002347 | Get ORF Coding potential... Type: noncoding Potential: -0.520 Folding energies... MFEI: -34.671 AMFE: -0.687 GC content %: 50.470 | |
Atauschii_AET2Gv20734300.9 AET2Gv20734300.9 |
High | No | 462 | OG0002347 | Get ORF Coding potential... Type: noncoding Potential: -0.739 Folding energies... MFEI: -30.714 AMFE: -0.628 GC content %: 48.918 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET2Gv20734300.8 | SwissProt | 2021-04-01 | A3KPP3 | 4.44e-7 |
Atauschii_AET2Gv20734300.11 | SwissProt | 2021-04-01 | A3KPP3 | 1.91e-4 |