Atauschii AET2Gv20736500
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20736500 [ AET2Gv20736500] |
2D | 416123665 | 416127286 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20736500.1 AET2Gv20736500.1 |
High | No | 901 | OG0002880 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -27.691 AMFE: -0.582 GC content %: 47.614 | |
| Atauschii_AET2Gv20736500.2 AET2Gv20736500.2 |
High | No | 1170 | OG0002880 | Get ORF Coding potential... Type: noncoding Potential: -1.221 Folding energies... MFEI: -25.966 AMFE: -0.604 GC content %: 42.991 | |
| Atauschii_AET2Gv20736500.3 AET2Gv20736500.3 |
Low | No | 2871 | OG0002880 | Get ORF Coding potential... Type: noncoding Potential: -1.312 Folding energies... MFEI: -25.566 AMFE: -0.650 GC content %: 39.324 | |
| Atauschii_AET2Gv20736500.4 AET2Gv20736500.4 |
Low | No | 1733 | OG0002880 | Get ORF Coding potential... Type: noncoding Potential: -1.270 Folding energies... MFEI: -25.857 AMFE: -0.637 GC content %: 40.623 | |
| Atauschii_AET2Gv20736500.5 AET2Gv20736500.5 |
High | No | 748 | OG0002880 | Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -27.326 AMFE: -0.587 GC content %: 46.524 | |
| Atauschii_AET2Gv20736500.6 AET2Gv20736500.6 |
High | No | 688 | OG0002880 | Get ORF Coding potential... Type: noncoding Potential: -1.255 Folding energies... MFEI: -25.596 AMFE: -0.579 GC content %: 44.186 | |
| Atauschii_AET2Gv20736500.7 AET2Gv20736500.7 |
Low | No | 1275 | OG0002880 | Get ORF Coding potential... Type: noncoding Potential: -1.235 Folding energies... MFEI: -23.192 AMFE: -0.630 GC content %: 36.784 | |
| Atauschii_AET2Gv20736500.8 AET2Gv20736500.8 |
High | No | 717 | OG0002880 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -23.570 AMFE: -0.612 GC content %: 38.494 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20736500.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20736500.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20736500.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
