Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20743700 [ AET2Gv20743700] |
2D | 420755173 | 420763896 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20743700.1 AET2Gv20743700.1 |
Low | No | 2128 | OG0006851 | Get ORF Coding potential... Type: noncoding Potential: -0.143 Folding energies... MFEI: -30.987 AMFE: -0.667 GC content %: 46.429 | |
Atauschii_AET2Gv20743700.2 AET2Gv20743700.2 |
Low | No | 563 | OG0016041 | Get ORF Coding potential... Type: noncoding Potential: -0.035 Folding energies... MFEI: -34.742 AMFE: -0.689 GC content %: 50.444 | |
Atauschii_AET2Gv20743700.21 AET2Gv20743700.21 |
Low | No | 504 | OG0006851 | Get ORF Coding potential... Type: noncoding Potential: -0.041 Folding energies... MFEI: -25.694 AMFE: -0.578 GC content %: 44.444 | |
Atauschii_AET2Gv20743700.22 AET2Gv20743700.22 |
Low | No | 1028 | OG0006851 | Get ORF Coding potential... Type: noncoding Potential: -0.889 Folding energies... MFEI: -28.512 AMFE: -0.632 GC content %: 45.136 | |
Atauschii_AET2Gv20743700.23 AET2Gv20743700.23 |
Low | No | 1278 | OG0006851 | Get ORF Coding potential... Type: noncoding Potential: -1.146 Folding energies... MFEI: -28.654 AMFE: -0.642 GC content %: 44.601 | |
Atauschii_AET2Gv20743700.8 AET2Gv20743700.8 |
Low | No | 3885 | OG0006851 | Get ORF Coding potential... Type: noncoding Potential: -0.147 Folding energies... MFEI: -30.499 AMFE: -0.685 GC content %: 44.556 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET2Gv20743700.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
Atauschii_AET2Gv20743700.22 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
Atauschii_AET2Gv20743700.1 | SwissProt | 2021-04-01 | C0LGP2 | 5.8e-26 |
Atauschii_AET2Gv20743700.23 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
Atauschii_AET2Gv20743700.2 | SwissProt | 2021-04-01 | C0LGL4 | 1.4e-17 |
Atauschii_AET2Gv20743700.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
Atauschii_AET2Gv20743700.21 | SwissProt | 2021-04-01 | Q8LEB6 | 6.72e-18 |
Atauschii_AET2Gv20743700.8 | SwissProt | 2021-04-01 | Q9ASQ6 | 4.52e-24 |