Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20745800 [ AET2Gv20745800] |
2D | 421758872 | 421764612 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20745800.1 AET2Gv20745800.1 |
Low | No | 3536 | OG0024730 | Get ORF Coding potential... Type: noncoding Potential: -0.904 Folding energies... MFEI: -30.034 AMFE: -0.677 GC content %: 44.344 | |
Atauschii_AET2Gv20745800.22 AET2Gv20745800.22 |
Low | No | 811 | OG0024730 | Get ORF Coding potential... Type: noncoding Potential: -0.814 Folding energies... MFEI: -29.667 AMFE: -0.652 GC content %: 45.499 | |
Atauschii_AET2Gv20745800.24 AET2Gv20745800.24 |
Low | No | 984 | OG0070824 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -26.758 AMFE: -0.624 GC content %: 42.886 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET2Gv20745800.22 | SwissProt | 2021-04-01 | Q56Y52 | 1.42e-5 |
Atauschii_AET2Gv20745800.24 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Atauschii_AET2Gv20745800.1 | SwissProt | 2021-04-01 | Q56Y52 | 3.35e-9 |