Atauschii AET2Gv20766400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20766400 [ AET2Gv20766400] |
2D | 431897408 | 431901148 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20766400.1 AET2Gv20766400.1 |
High | No | 1279 | OG0009820 | Get ORF Coding potential... Type: noncoding Potential: -0.545 Folding energies... MFEI: -26.145 AMFE: -0.732 GC content %: 35.731 | |
| Atauschii_AET2Gv20766400.4 AET2Gv20766400.4 |
High | No | 1025 | OG0009820 | Get ORF Coding potential... Type: noncoding Potential: -0.808 Folding energies... MFEI: -25.922 AMFE: -0.701 GC content %: 36.976 | |
| Atauschii_AET2Gv20766400.5 AET2Gv20766400.5 |
High | No | 1100 | OG0009820 | Get ORF Coding potential... Type: noncoding Potential: -0.817 Folding energies... MFEI: -24.545 AMFE: -0.673 GC content %: 36.455 | |
| Atauschii_AET2Gv20766400.6 AET2Gv20766400.6 |
High | No | 267 | OG0009820 | Get ORF Coding potential... Type: noncoding Potential: -1.398 Folding energies... MFEI: -26.142 AMFE: -0.607 GC content %: 43.071 | |
| Atauschii_AET2Gv20766400.7 AET2Gv20766400.7 |
High | No | 2475 | OG0016044 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -26.529 AMFE: -0.677 GC content %: 39.192 | |
| Atauschii_AET2Gv20766400.8 AET2Gv20766400.8 |
High | No | 2210 | OG0016044 | Get ORF Coding potential... Type: noncoding Potential: -1.114 Folding energies... MFEI: -27.005 AMFE: -0.700 GC content %: 38.552 | |
| Atauschii_AET2Gv20766400.9 AET2Gv20766400.9 |
High | No | 700 | OG0016044 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -26.743 AMFE: -0.521 GC content %: 51.286 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
