Atauschii AET2Gv20800400
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20800400 [ AET2Gv20800400] |
2D | 453147882 | 453151624 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20800400.1 AET2Gv20800400.1 |
High | No | 2532 | OG0001290 | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -29.080 AMFE: -0.677 GC content %: 42.970 | |
| Atauschii_AET2Gv20800400.10 AET2Gv20800400.10 |
Low | No | 1751 | OG0001290 | Get ORF Coding potential... Type: noncoding Potential: -1.132 Folding energies... MFEI: -33.301 AMFE: -0.657 GC content %: 50.714 | |
| Atauschii_AET2Gv20800400.11 AET2Gv20800400.11 |
High | No | 1333 | OG0001290 | Get ORF Coding potential... Type: noncoding Potential: -1.372 Folding energies... MFEI: -30.195 AMFE: -0.688 GC content %: 43.886 | |
| Atauschii_AET2Gv20800400.12 AET2Gv20800400.12 |
High | No | 1109 | OG0001290 | Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -31.885 AMFE: -0.685 GC content %: 46.528 | |
| Atauschii_AET2Gv20800400.13 AET2Gv20800400.13 |
High | No | 1328 | OG0001290 | Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -30.294 AMFE: -0.682 GC content %: 44.428 | |
| Atauschii_AET2Gv20800400.14 AET2Gv20800400.14 |
High | No | 1151 | OG0001290 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -31.833 AMFE: -0.710 GC content %: 44.831 | |
| Atauschii_AET2Gv20800400.15 AET2Gv20800400.15 |
High | No | 1179 | OG0001290 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -30.577 AMFE: -0.679 GC content %: 45.038 | |
| Atauschii_AET2Gv20800400.2 AET2Gv20800400.2 |
High | No | 2641 | OG0001290 | Get ORF Coding potential... Type: noncoding Potential: -1.132 Folding energies... MFEI: -29.379 AMFE: -0.678 GC content %: 43.355 | |
| Atauschii_AET2Gv20800400.4 AET2Gv20800400.4 |
High | No | 1860 | OG0001290 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -28.591 AMFE: -0.678 GC content %: 42.151 | |
| Atauschii_AET2Gv20800400.6 AET2Gv20800400.6 |
High | No | 1378 | OG0001290 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -25.893 AMFE: -0.663 GC content %: 39.042 | |
| Atauschii_AET2Gv20800400.7 AET2Gv20800400.7 |
Low | No | 1572 | OG0001290 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -27.449 AMFE: -0.653 GC content %: 42.048 | |
| Atauschii_AET2Gv20800400.9 AET2Gv20800400.9 |
High | No | 1132 | OG0001290 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -32.447 AMFE: -0.708 GC content %: 45.848 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20800400.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET2Gv20800400.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
