Atauschii AET2Gv20801900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20801900 [ AET2Gv20801900] |
2D | 454567125 | 454573541 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20801900.10 AET2Gv20801900.10 |
High | No | 3352 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -25.400 AMFE: -0.602 GC content %: 42.184 | |
| Atauschii_AET2Gv20801900.11 AET2Gv20801900.11 |
High | No | 5918 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -24.714 AMFE: -0.621 GC content %: 39.828 | |
| Atauschii_AET2Gv20801900.12 AET2Gv20801900.12 |
High | No | 3936 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -25.020 AMFE: -0.596 GC content %: 41.997 | |
| Atauschii_AET2Gv20801900.13 AET2Gv20801900.13 |
High | No | 3156 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.164 Folding energies... MFEI: -25.117 AMFE: -0.594 GC content %: 42.269 | |
| Atauschii_AET2Gv20801900.14 AET2Gv20801900.14 |
High | No | 3154 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.164 Folding energies... MFEI: -24.867 AMFE: -0.596 GC content %: 41.756 | |
| Atauschii_AET2Gv20801900.15 AET2Gv20801900.15 |
High | No | 3949 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -24.999 AMFE: -0.601 GC content %: 41.605 | |
| Atauschii_AET2Gv20801900.16 AET2Gv20801900.16 |
High | No | 4044 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -24.585 AMFE: -0.574 GC content %: 42.854 | |
| Atauschii_AET2Gv20801900.17 AET2Gv20801900.17 |
High | No | 3332 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -24.880 AMFE: -0.598 GC content %: 41.597 | |
| Atauschii_AET2Gv20801900.18 AET2Gv20801900.18 |
High | No | 3961 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -24.446 AMFE: -0.588 GC content %: 41.555 | |
| Atauschii_AET2Gv20801900.19 AET2Gv20801900.19 |
High | No | 4721 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -24.573 AMFE: -0.610 GC content %: 40.288 | |
| Atauschii_AET2Gv20801900.20 AET2Gv20801900.20 |
High | No | 3026 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -24.746 AMFE: -0.599 GC content %: 41.342 | |
| Atauschii_AET2Gv20801900.21 AET2Gv20801900.21 |
High | No | 3773 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.168 Folding energies... MFEI: -24.718 AMFE: -0.598 GC content %: 41.346 | |
| Atauschii_AET2Gv20801900.22 AET2Gv20801900.22 |
High | No | 5063 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -24.464 AMFE: -0.622 GC content %: 39.305 | |
| Atauschii_AET2Gv20801900.23 AET2Gv20801900.23 |
High | No | 5428 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -24.394 AMFE: -0.622 GC content %: 39.204 | |
| Atauschii_AET2Gv20801900.24 AET2Gv20801900.24 |
High | No | 4691 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -24.654 AMFE: -0.612 GC content %: 40.269 | |
| Atauschii_AET2Gv20801900.25 AET2Gv20801900.25 |
High | No | 5523 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -24.508 AMFE: -0.623 GC content %: 39.326 | |
| Atauschii_AET2Gv20801900.26 AET2Gv20801900.26 |
High | No | 4612 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -24.599 AMFE: -0.627 GC content %: 39.224 | |
| Atauschii_AET2Gv20801900.27 AET2Gv20801900.27 |
High | No | 4542 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -24.326 AMFE: -0.634 GC content %: 38.375 | |
| Atauschii_AET2Gv20801900.28 AET2Gv20801900.28 |
High | No | 3839 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -24.762 AMFE: -0.629 GC content %: 39.385 | |
| Atauschii_AET2Gv20801900.29 AET2Gv20801900.29 |
High | No | 433 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.287 Folding energies... MFEI: -26.212 AMFE: -0.454 GC content %: 57.737 | |
| Atauschii_AET2Gv20801900.30 AET2Gv20801900.30 |
High | No | 752 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -25.638 AMFE: -0.389 GC content %: 65.957 | |
| Atauschii_AET2Gv20801900.5 AET2Gv20801900.5 |
High | No | 4955 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -25.106 AMFE: -0.619 GC content %: 40.565 | |
| Atauschii_AET2Gv20801900.6 AET2Gv20801900.6 |
High | No | 5150 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -24.619 AMFE: -0.621 GC content %: 39.670 | |
| Atauschii_AET2Gv20801900.7 AET2Gv20801900.7 |
High | No | 5200 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -25.079 AMFE: -0.600 GC content %: 41.788 | |
| Atauschii_AET2Gv20801900.8 AET2Gv20801900.8 |
High | No | 5250 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -24.682 AMFE: -0.602 GC content %: 41.029 | |
| Atauschii_AET2Gv20801900.9 AET2Gv20801900.9 |
High | No | 5126 | OG0000270 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -25.080 AMFE: -0.599 GC content %: 41.865 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
