Atauschii AET2Gv20805300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20805300 [ AET2Gv20805300] |
2D | 457522412 | 457534037 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20805300.1 AET2Gv20805300.1 |
Low | No | 6255 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.298 Folding energies... MFEI: -31.341 AMFE: -0.694 GC content %: 45.164 | |
| Atauschii_AET2Gv20805300.10 AET2Gv20805300.10 |
Low | No | 2030 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -1.188 Folding energies... MFEI: -35.680 AMFE: -0.691 GC content %: 51.626 | |
| Atauschii_AET2Gv20805300.11 AET2Gv20805300.11 |
Low | No | 1899 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -29.774 AMFE: -0.685 GC content %: 43.497 | |
| Atauschii_AET2Gv20805300.12 AET2Gv20805300.12 |
Low | No | 2545 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.214 Folding energies... MFEI: -33.631 AMFE: -0.686 GC content %: 49.037 | |
| Atauschii_AET2Gv20805300.14 AET2Gv20805300.14 |
Low | No | 2105 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -1.218 Folding energies... MFEI: -28.594 AMFE: -0.686 GC content %: 41.663 | |
| Atauschii_AET2Gv20805300.15 AET2Gv20805300.15 |
Low | No | 3331 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.243 Folding energies... MFEI: -32.393 AMFE: -0.699 GC content %: 46.352 | |
| Atauschii_AET2Gv20805300.16 AET2Gv20805300.16 |
Low | No | 2489 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.212 Folding energies... MFEI: -29.365 AMFE: -0.669 GC content %: 43.873 | |
| Atauschii_AET2Gv20805300.17 AET2Gv20805300.17 |
Low | No | 2387 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.433 Folding energies... MFEI: -34.256 AMFE: -0.695 GC content %: 49.309 | |
| Atauschii_AET2Gv20805300.18 AET2Gv20805300.18 |
Low | No | 1261 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -32.030 AMFE: -0.699 GC content %: 45.837 | |
| Atauschii_AET2Gv20805300.19 AET2Gv20805300.19 |
Low | No | 3297 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.242 Folding energies... MFEI: -32.517 AMFE: -0.691 GC content %: 47.073 | |
| Atauschii_AET2Gv20805300.2 AET2Gv20805300.2 |
Low | No | 5357 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -30.280 AMFE: -0.679 GC content %: 44.596 | |
| Atauschii_AET2Gv20805300.20 AET2Gv20805300.20 |
Low | No | 2824 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -1.146 Folding energies... MFEI: -32.390 AMFE: -0.685 GC content %: 47.273 | |
| Atauschii_AET2Gv20805300.22 AET2Gv20805300.22 |
Low | No | 2445 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.200 Folding energies... MFEI: -29.112 AMFE: -0.675 GC content %: 43.108 | |
| Atauschii_AET2Gv20805300.23 AET2Gv20805300.23 |
Low | No | 3222 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.240 Folding energies... MFEI: -32.557 AMFE: -0.685 GC content %: 47.517 | |
| Atauschii_AET2Gv20805300.25 AET2Gv20805300.25 |
Low | No | 2078 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.392 Folding energies... MFEI: -35.188 AMFE: -0.685 GC content %: 51.396 | |
| Atauschii_AET2Gv20805300.26 AET2Gv20805300.26 |
Low | No | 3493 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -30.696 AMFE: -0.683 GC content %: 44.947 | |
| Atauschii_AET2Gv20805300.3 AET2Gv20805300.3 |
Low | No | 2391 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -30.109 AMFE: -0.668 GC content %: 45.044 | |
| Atauschii_AET2Gv20805300.30 AET2Gv20805300.30 |
Low | No | 2213 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.421 Folding energies... MFEI: -35.201 AMFE: -0.699 GC content %: 50.339 | |
| Atauschii_AET2Gv20805300.31 AET2Gv20805300.31 |
Low | No | 1776 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.355 Folding energies... MFEI: -37.432 AMFE: -0.698 GC content %: 53.604 | |
| Atauschii_AET2Gv20805300.33 AET2Gv20805300.33 |
Low | No | 3586 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.248 Folding energies... MFEI: -33.608 AMFE: -0.711 GC content %: 47.267 | |
| Atauschii_AET2Gv20805300.34 AET2Gv20805300.34 |
Low | No | 2891 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.225 Folding energies... MFEI: -33.241 AMFE: -0.681 GC content %: 48.807 | |
| Atauschii_AET2Gv20805300.36 AET2Gv20805300.36 |
Low | No | 3446 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.245 Folding energies... MFEI: -31.521 AMFE: -0.685 GC content %: 45.995 | |
| Atauschii_AET2Gv20805300.37 AET2Gv20805300.37 |
Low | No | 3692 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -1.109 Folding energies... MFEI: -31.417 AMFE: -0.686 GC content %: 45.775 | |
| Atauschii_AET2Gv20805300.38 AET2Gv20805300.38 |
Low | No | 2188 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.313 Folding energies... MFEI: -34.872 AMFE: -0.686 GC content %: 50.868 | |
| Atauschii_AET2Gv20805300.39 AET2Gv20805300.39 |
Low | No | 2757 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -32.376 AMFE: -0.682 GC content %: 47.443 | |
| Atauschii_AET2Gv20805300.4 AET2Gv20805300.4 |
Low | No | 1611 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -37.169 AMFE: -0.692 GC content %: 53.693 | |
| Atauschii_AET2Gv20805300.41 AET2Gv20805300.41 |
Low | No | 1925 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.183 Folding energies... MFEI: -35.600 AMFE: -0.683 GC content %: 52.104 | |
| Atauschii_AET2Gv20805300.42 AET2Gv20805300.42 |
Low | No | 2292 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.226 Folding energies... MFEI: -33.761 AMFE: -0.685 GC content %: 49.302 | |
| Atauschii_AET2Gv20805300.43 AET2Gv20805300.43 |
Low | No | 3006 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.227 Folding energies... MFEI: -32.016 AMFE: -0.689 GC content %: 46.474 | |
| Atauschii_AET2Gv20805300.44 AET2Gv20805300.44 |
Low | No | 2281 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.320 Folding energies... MFEI: -33.354 AMFE: -0.688 GC content %: 48.488 | |
| Atauschii_AET2Gv20805300.45 AET2Gv20805300.45 |
Low | No | 1829 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.381 Folding energies... MFEI: -34.161 AMFE: -0.681 GC content %: 50.137 | |
| Atauschii_AET2Gv20805300.46 AET2Gv20805300.46 |
Low | No | 1338 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -27.803 AMFE: -0.694 GC content %: 40.060 | |
| Atauschii_AET2Gv20805300.47 AET2Gv20805300.47 |
Low | No | 2502 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.321 Folding energies... MFEI: -32.878 AMFE: -0.686 GC content %: 47.922 | |
| Atauschii_AET2Gv20805300.48 AET2Gv20805300.48 |
Low | No | 3262 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -30.555 AMFE: -0.677 GC content %: 45.126 | |
| Atauschii_AET2Gv20805300.49 AET2Gv20805300.49 |
Low | No | 2443 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.969 Folding energies... MFEI: -32.329 AMFE: -0.677 GC content %: 47.769 | |
| Atauschii_AET2Gv20805300.5 AET2Gv20805300.5 |
Low | No | 2212 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -1.223 Folding energies... MFEI: -33.978 AMFE: -0.683 GC content %: 49.774 | |
| Atauschii_AET2Gv20805300.51 AET2Gv20805300.51 |
Low | No | 1374 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.911 Folding energies... MFEI: -27.627 AMFE: -0.626 GC content %: 44.105 | |
| Atauschii_AET2Gv20805300.53 AET2Gv20805300.53 |
Low | Yes | 2237 | OG0070946 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -28.404 AMFE: -0.659 GC content %: 43.093 | |
| Atauschii_AET2Gv20805300.6 AET2Gv20805300.6 |
Low | No | 2014 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -1.214 Folding energies... MFEI: -34.757 AMFE: -0.690 GC content %: 50.397 | |
| Atauschii_AET2Gv20805300.7 AET2Gv20805300.7 |
Low | No | 2249 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.224 Folding energies... MFEI: -35.082 AMFE: -0.691 GC content %: 50.778 | |
| Atauschii_AET2Gv20805300.8 AET2Gv20805300.8 |
Low | No | 2380 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.326 Folding energies... MFEI: -34.252 AMFE: -0.685 GC content %: 50.000 | |
| Atauschii_AET2Gv20805300.9 AET2Gv20805300.9 |
Low | No | 1760 | OG0000065 | Get ORF Coding potential... Type: noncoding Potential: -0.357 Folding energies... MFEI: -31.551 AMFE: -0.675 GC content %: 46.761 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20805300.25 | SwissProt | 2021-04-01 | Q6EX42 | 2.93e-9 |
| Atauschii_AET2Gv20805300.45 | SwissProt | 2021-04-01 | Q6EX42 | 2.37e-9 |
| Atauschii_AET2Gv20805300.53 | Rfam | 14.6 | MIR1122 | 7.6e-16 |
| Atauschii_AET2Gv20805300.19 | SwissProt | 2021-04-01 | Q6EX42 | 5.67e-9 |
| Atauschii_AET2Gv20805300.4 | SwissProt | 2021-04-01 | F4JMJ1 | 1.07e-8 |
| Atauschii_AET2Gv20805300.51 | SwissProt | 2021-04-01 | Q6EX42 | 2.13e-7 |
| Atauschii_AET2Gv20805300.14 | SwissProt | 2021-04-01 | F4JMJ1 | 2.39e-10 |
| Atauschii_AET2Gv20805300.34 | SwissProt | 2021-04-01 | Q6EX42 | 4.75e-9 |
| Atauschii_AET2Gv20805300.26 | SwissProt | 2021-04-01 | F4JMJ1 | 4.98e-10 |
| Atauschii_AET2Gv20805300.46 | SwissProt | 2021-04-01 | F4JMJ1 | 9.55e-11 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
