Atauschii AET2Gv20808700
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20808700 [ AET2Gv20808700] |
2D | 458862401 | 458874204 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20808700.1 AET2Gv20808700.1 |
High | No | 2252 | OG0003700 | Get ORF Coding potential... Type: noncoding Potential: -1.355 Folding energies... MFEI: -31.106 AMFE: -0.694 GC content %: 44.805 | |
| Atauschii_AET2Gv20808700.3 AET2Gv20808700.3 |
Low | Yes | 3298 | OG0003700 | Get ORF Coding potential... Type: noncoding Potential: -1.310 Folding energies... MFEI: -30.579 AMFE: -0.702 GC content %: 43.542 | |
| Atauschii_AET2Gv20808700.4 AET2Gv20808700.4 |
Low | Yes | 3183 | OG0003700 | Get ORF Coding potential... Type: noncoding Potential: -1.308 Folding energies... MFEI: -30.723 AMFE: -0.705 GC content %: 43.575 | |
| Atauschii_AET2Gv20808700.5 AET2Gv20808700.5 |
Low | No | 2079 | OG0003700 | Get ORF Coding potential... Type: noncoding Potential: -1.214 Folding energies... MFEI: -30.909 AMFE: -0.695 GC content %: 44.493 | |
| Atauschii_AET2Gv20808700.7 AET2Gv20808700.7 |
High | No | 2122 | OG0003700 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -31.381 AMFE: -0.693 GC content %: 45.287 | |
| Atauschii_AET2Gv20808700.8 AET2Gv20808700.8 |
Low | No | 1785 | OG0003700 | Get ORF Coding potential... Type: noncoding Potential: -1.239 Folding energies... MFEI: -28.717 AMFE: -0.681 GC content %: 42.185 | |
| Atauschii_AET2Gv20808700.9 AET2Gv20808700.9 |
Low | No | 1073 | OG0003700 | Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -29.925 AMFE: -0.653 GC content %: 45.853 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20808700.4 | Rfam | 14.6 | MIR1122 | 2.1e-12 |
| Atauschii_AET2Gv20808700.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET2Gv20808700.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET2Gv20808700.5 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET2Gv20808700.8 | SwissProt | 2021-04-01 | Q9FKA0 | 1.76e-4 |
| Atauschii_AET2Gv20808700.9 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET2Gv20808700.3 | Rfam | 14.6 | MIR1122 | 2.2e-12 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
