GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv20809700 [ AET2Gv20809700]	2D	459182382	459198122	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv20809700.11 AET2Gv20809700.11	High	No	917	OG0024755		Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -28.201 AMFE: -0.690 GC content %: 40.894
Atauschii_AET2Gv20809700.22 AET2Gv20809700.22	High	No	1064	OG0070957		Get ORF Coding potential... Type: noncoding Potential: -0.843 Folding energies... MFEI: -26.814 AMFE: -0.644 GC content %: 41.635
Atauschii_AET2Gv20809700.30 AET2Gv20809700.30	Low	No	560	OG0070958		Get ORF Coding potential... Type: coding Potential: 0.124 Folding energies... MFEI: -34.393 AMFE: -0.604 GC content %: 56.964
Atauschii_AET2Gv20809700.7 AET2Gv20809700.7	High	No	1416	OG0024755		Get ORF Coding potential... Type: noncoding Potential: -0.669 Folding energies... MFEI: -27.458 AMFE: -0.691 GC content %: 39.760

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).