Atauschii AET2Gv20811900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20811900 [ AET2Gv20811900] |
2D | 460488473 | 460498994 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20811900.1 AET2Gv20811900.1 |
High | No | 532 | OG0009824 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -21.823 AMFE: -0.540 GC content %: 40.414 | |
| Atauschii_AET2Gv20811900.12 AET2Gv20811900.12 |
Low | No | 620 | OG0009824 | Get ORF Coding potential... Type: noncoding Potential: -0.900 Folding energies... MFEI: -25.758 AMFE: -0.619 GC content %: 41.613 | |
| Atauschii_AET2Gv20811900.2 AET2Gv20811900.2 |
Low | No | 555 | OG0009824 | Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -25.063 AMFE: -0.605 GC content %: 41.441 | |
| Atauschii_AET2Gv20811900.24 AET2Gv20811900.24 |
High | No | 243 | OG0070960 | Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -25.720 AMFE: -0.613 GC content %: 41.975 | |
| Atauschii_AET2Gv20811900.26 AET2Gv20811900.26 |
High | No | 477 | OG0070961 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -34.864 AMFE: -0.759 GC content %: 45.912 | |
| Atauschii_AET2Gv20811900.28 AET2Gv20811900.28 |
Low | No | 1889 | OG0070962 | Get ORF Coding potential... Type: noncoding Potential: -1.217 Folding energies... MFEI: -25.760 AMFE: -0.639 GC content %: 40.339 | |
| Atauschii_AET2Gv20811900.5 AET2Gv20811900.5 |
Low | No | 1204 | OG0009824 | Get ORF Coding potential... Type: noncoding Potential: -0.803 Folding energies... MFEI: -27.458 AMFE: -0.627 GC content %: 43.771 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20811900.2 | SwissProt | 2021-04-01 | Q13530 | 4.05e-7 |
| Atauschii_AET2Gv20811900.5 | SwissProt | 2021-04-01 | Q13530 | 5.54e-7 |
| Atauschii_AET2Gv20811900.28 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR; LINE/L1 | |
| Atauschii_AET2Gv20811900.12 | SwissProt | 2021-04-01 | Q5R533 | 4.84e-7 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
