Atauschii AET2Gv20820700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20820700 [ AET2Gv20820700] |
2D | 466435021 | 466442904 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20820700.1 AET2Gv20820700.1 |
Low | No | 4200 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -29.388 AMFE: -0.670 GC content %: 43.857 | |
| Atauschii_AET2Gv20820700.10 AET2Gv20820700.10 |
High | No | 2519 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -30.167 AMFE: -0.670 GC content %: 45.058 | |
| Atauschii_AET2Gv20820700.11 AET2Gv20820700.11 |
High | No | 1145 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -24.646 AMFE: -0.638 GC content %: 38.603 | |
| Atauschii_AET2Gv20820700.12 AET2Gv20820700.12 |
High | No | 2080 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -27.606 AMFE: -0.668 GC content %: 41.298 | |
| Atauschii_AET2Gv20820700.13 AET2Gv20820700.13 |
High | No | 2262 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -30.477 AMFE: -0.678 GC content %: 44.960 | |
| Atauschii_AET2Gv20820700.14 AET2Gv20820700.14 |
High | No | 2749 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -33.692 AMFE: -0.698 GC content %: 48.272 | |
| Atauschii_AET2Gv20820700.15 AET2Gv20820700.15 |
High | No | 2421 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.133 Folding energies... MFEI: -29.537 AMFE: -0.678 GC content %: 43.577 | |
| Atauschii_AET2Gv20820700.16 AET2Gv20820700.16 |
High | No | 1731 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -25.869 AMFE: -0.646 GC content %: 40.035 | |
| Atauschii_AET2Gv20820700.17 AET2Gv20820700.17 |
High | No | 1880 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -30.479 AMFE: -0.643 GC content %: 47.394 | |
| Atauschii_AET2Gv20820700.18 AET2Gv20820700.18 |
High | No | 1047 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -0.897 Folding energies... MFEI: -26.972 AMFE: -0.623 GC content %: 43.266 | |
| Atauschii_AET2Gv20820700.2 AET2Gv20820700.2 |
Low | No | 4270 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -29.279 AMFE: -0.671 GC content %: 43.607 | |
| Atauschii_AET2Gv20820700.20 AET2Gv20820700.20 |
High | No | 1840 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -32.359 AMFE: -0.680 GC content %: 47.609 | |
| Atauschii_AET2Gv20820700.21 AET2Gv20820700.21 |
High | No | 1839 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -30.669 AMFE: -0.648 GC content %: 47.308 | |
| Atauschii_AET2Gv20820700.22 AET2Gv20820700.22 |
High | No | 2317 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.130 Folding energies... MFEI: -29.215 AMFE: -0.662 GC content %: 44.109 | |
| Atauschii_AET2Gv20820700.23 AET2Gv20820700.23 |
High | No | 633 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -42.085 AMFE: -0.699 GC content %: 60.190 | |
| Atauschii_AET2Gv20820700.24 AET2Gv20820700.24 |
High | No | 494 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -41.073 AMFE: -0.659 GC content %: 62.348 | |
| Atauschii_AET2Gv20820700.25 AET2Gv20820700.25 |
High | No | 807 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -27.720 AMFE: -0.632 GC content %: 43.866 | |
| Atauschii_AET2Gv20820700.26 AET2Gv20820700.26 |
High | No | 2234 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -29.924 AMFE: -0.675 GC content %: 44.315 | |
| Atauschii_AET2Gv20820700.27 AET2Gv20820700.27 |
High | No | 1199 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.159 Folding energies... MFEI: -28.249 AMFE: -0.662 GC content %: 42.702 | |
| Atauschii_AET2Gv20820700.28 AET2Gv20820700.28 |
High | No | 503 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -27.237 AMFE: -0.571 GC content %: 47.714 | |
| Atauschii_AET2Gv20820700.29 AET2Gv20820700.29 |
High | No | 738 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.109 Folding energies... MFEI: -26.030 AMFE: -0.624 GC content %: 41.734 | |
| Atauschii_AET2Gv20820700.3 AET2Gv20820700.3 |
High | No | 3403 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -30.021 AMFE: -0.662 GC content %: 45.372 | |
| Atauschii_AET2Gv20820700.4 AET2Gv20820700.4 |
High | No | 3154 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -30.314 AMFE: -0.663 GC content %: 45.751 | |
| Atauschii_AET2Gv20820700.5 AET2Gv20820700.5 |
High | No | 2937 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -30.824 AMFE: -0.666 GC content %: 46.306 | |
| Atauschii_AET2Gv20820700.6 AET2Gv20820700.6 |
High | No | 3094 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.097 Folding energies... MFEI: -30.155 AMFE: -0.656 GC content %: 45.960 | |
| Atauschii_AET2Gv20820700.7 AET2Gv20820700.7 |
High | No | 1476 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.180 Folding energies... MFEI: -27.249 AMFE: -0.653 GC content %: 41.734 | |
| Atauschii_AET2Gv20820700.8 AET2Gv20820700.8 |
High | No | 1963 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -30.917 AMFE: -0.655 GC content %: 47.173 | |
| Atauschii_AET2Gv20820700.9 AET2Gv20820700.9 |
High | No | 1535 | OG0000225 | Get ORF Coding potential... Type: noncoding Potential: -1.025 Folding energies... MFEI: -27.577 AMFE: -0.674 GC content %: 40.912 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20820700.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET2Gv20820700.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
