GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv20850000 [ AET2Gv20850000]	2D	480916600	480919899	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv20850000.1 AET2Gv20850000.1	High	No	1061	OG0006855		Get ORF Coding potential... Type: noncoding Potential: -1.274 Folding energies... MFEI: -27.606 AMFE: -0.631 GC content %: 43.732
Atauschii_AET2Gv20850000.2 AET2Gv20850000.2	High	No	761	OG0006855		Get ORF Coding potential... Type: noncoding Potential: -1.440 Folding energies... MFEI: -28.265 AMFE: -0.606 GC content %: 46.649
Atauschii_AET2Gv20850000.3 AET2Gv20850000.3	High	No	760	OG0006855		Get ORF Coding potential... Type: noncoding Potential: -1.304 Folding energies... MFEI: -28.053 AMFE: -0.601 GC content %: 46.711
Atauschii_AET2Gv20850000.4 AET2Gv20850000.4	High	No	238	OG0071036		Get ORF Coding potential... Type: noncoding Potential: -0.912 Folding energies... MFEI: -26.807 AMFE: -0.536 GC content %: 50.000
Atauschii_AET2Gv20850000.6 AET2Gv20850000.6	High	No	726	OG0006855		Get ORF Coding potential... Type: noncoding Potential: -1.312 Folding energies... MFEI: -23.058 AMFE: -0.632 GC content %: 36.501

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).