GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv20852800 [ AET2Gv20852800]	2D	482168600	482170963	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv20852800.1 AET2Gv20852800.1	High	No	935	OG0009827		Get ORF Coding potential... Type: noncoding Potential: -0.104 Folding energies... MFEI: -35.626 AMFE: -0.666 GC content %: 53.476
Atauschii_AET2Gv20852800.3 AET2Gv20852800.3	Low	No	367	OG0009827		Get ORF Coding potential... Type: coding Potential: 0.140 Folding energies... MFEI: -45.286 AMFE: -0.676 GC content %: 67.030
Atauschii_AET2Gv20852800.4 AET2Gv20852800.4	Low	No	362	OG0009827		Get ORF Coding potential... Type: coding Potential: 0.160 Folding energies... MFEI: -46.354 AMFE: -0.696 GC content %: 66.575

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).