Atauschii AET2Gv20864100
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20864100 [ AET2Gv20864100] |
2D | 489306163 | 489312836 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20864100.1 AET2Gv20864100.1 |
Low | No | 3208 | OG0002350 | Get ORF Coding potential... Type: coding Potential: 0.259 Folding energies... MFEI: -27.060 AMFE: -0.660 GC content %: 41.022 | |
| Atauschii_AET2Gv20864100.10 AET2Gv20864100.10 |
High | No | 541 | OG0002350 | Get ORF Coding potential... Type: noncoding Potential: -0.622 Folding energies... MFEI: -29.409 AMFE: -0.677 GC content %: 43.438 | |
| Atauschii_AET2Gv20864100.11 AET2Gv20864100.11 |
High | No | 542 | OG0002350 | Get ORF Coding potential... Type: noncoding Potential: -0.954 Folding energies... MFEI: -29.244 AMFE: -0.672 GC content %: 43.542 | |
| Atauschii_AET2Gv20864100.12 AET2Gv20864100.12 |
High | No | 398 | OG0002350 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -28.769 AMFE: -0.626 GC content %: 45.980 | |
| Atauschii_AET2Gv20864100.2 AET2Gv20864100.2 |
High | No | 1586 | OG0002350 | Get ORF Coding potential... Type: noncoding Potential: -0.499 Folding energies... MFEI: -27.516 AMFE: -0.662 GC content %: 41.551 | |
| Atauschii_AET2Gv20864100.3 AET2Gv20864100.3 |
High | No | 937 | OG0002350 | Get ORF Coding potential... Type: noncoding Potential: -0.234 Folding energies... MFEI: -29.157 AMFE: -0.662 GC content %: 44.077 | |
| Atauschii_AET2Gv20864100.5 AET2Gv20864100.5 |
High | No | 615 | OG0071063 | Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -25.398 AMFE: -0.659 GC content %: 38.537 | |
| Atauschii_AET2Gv20864100.6 AET2Gv20864100.6 |
High | No | 565 | OG0071064 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -26.212 AMFE: -0.655 GC content %: 40.000 | |
| Atauschii_AET2Gv20864100.7 AET2Gv20864100.7 |
High | No | 798 | OG0002350 | Get ORF Coding potential... Type: noncoding Potential: -0.476 Folding energies... MFEI: -29.311 AMFE: -0.655 GC content %: 44.737 | |
| Atauschii_AET2Gv20864100.8 AET2Gv20864100.8 |
High | No | 797 | OG0002350 | Get ORF Coding potential... Type: noncoding Potential: -0.493 Folding energies... MFEI: -29.398 AMFE: -0.656 GC content %: 44.793 | |
| Atauschii_AET2Gv20864100.9 AET2Gv20864100.9 |
High | No | 937 | OG0002350 | Get ORF Coding potential... Type: noncoding Potential: -0.484 Folding energies... MFEI: -28.474 AMFE: -0.656 GC content %: 43.436 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20864100.1 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
