Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20876000 [ AET2Gv20876000] |
2D | 497122334 | 497125619 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20876000.18 AET2Gv20876000.18 |
High | No | 222 | OG0071082 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -46.667 AMFE: -0.628 GC content %: 74.324 | |
Atauschii_AET2Gv20876000.5 AET2Gv20876000.5 |
Low | No | 1392 | OG0015803 | Get ORF Coding potential... Type: noncoding Potential: -0.027 Folding energies... MFEI: -26.774 AMFE: -0.657 GC content %: 40.733 | |
Atauschii_AET2Gv20876000.8 AET2Gv20876000.8 |
Low | No | 540 | OG0015803 | Get ORF Coding potential... Type: noncoding Potential: -0.894 Folding energies... MFEI: -27.315 AMFE: -0.622 GC content %: 43.889 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET2Gv20876000.5 | SwissProt | 2021-04-01 | Q54YW1 | 1.89e-14 |
Atauschii_AET2Gv20876000.8 | SwissProt | 2021-04-01 | Q54RS7 | 5.26e-4 |