Atauschii AET2Gv20902700
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20902700 [ AET2Gv20902700] |
2D | 517253458 | 517256207 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20902700.1 AET2Gv20902700.1 |
Low | No | 1723 | OG0001291 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -27.266 AMFE: -0.632 GC content %: 43.122 | |
| Atauschii_AET2Gv20902700.10 AET2Gv20902700.10 |
Low | No | 1861 | OG0001291 | Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -28.264 AMFE: -0.629 GC content %: 44.922 | |
| Atauschii_AET2Gv20902700.11 AET2Gv20902700.11 |
Low | No | 1515 | OG0001291 | Get ORF Coding potential... Type: noncoding Potential: -1.194 Folding energies... MFEI: -28.785 AMFE: -0.627 GC content %: 45.941 | |
| Atauschii_AET2Gv20902700.12 AET2Gv20902700.12 |
Low | No | 1839 | OG0001291 | Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -29.473 AMFE: -0.630 GC content %: 46.765 | |
| Atauschii_AET2Gv20902700.13 AET2Gv20902700.13 |
Low | No | 1831 | OG0001291 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -29.689 AMFE: -0.630 GC content %: 47.133 | |
| Atauschii_AET2Gv20902700.14 AET2Gv20902700.14 |
Low | No | 1836 | OG0001291 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -30.093 AMFE: -0.634 GC content %: 47.495 | |
| Atauschii_AET2Gv20902700.2 AET2Gv20902700.2 |
Low | No | 1952 | OG0001291 | Get ORF Coding potential... Type: noncoding Potential: -1.215 Folding energies... MFEI: -29.739 AMFE: -0.634 GC content %: 46.926 | |
| Atauschii_AET2Gv20902700.3 AET2Gv20902700.3 |
Low | No | 1934 | OG0001291 | Get ORF Coding potential... Type: noncoding Potential: -1.214 Folding energies... MFEI: -29.638 AMFE: -0.630 GC content %: 47.053 | |
| Atauschii_AET2Gv20902700.4 AET2Gv20902700.4 |
Low | No | 1792 | OG0001291 | Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -29.023 AMFE: -0.637 GC content %: 45.592 | |
| Atauschii_AET2Gv20902700.5 AET2Gv20902700.5 |
Low | No | 1856 | OG0001291 | Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -29.235 AMFE: -0.632 GC content %: 46.282 | |
| Atauschii_AET2Gv20902700.6 AET2Gv20902700.6 |
Low | No | 2222 | OG0001291 | Get ORF Coding potential... Type: noncoding Potential: -1.226 Folding energies... MFEI: -30.050 AMFE: -0.646 GC content %: 46.490 | |
| Atauschii_AET2Gv20902700.9 AET2Gv20902700.9 |
Low | No | 1777 | OG0001291 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -29.071 AMFE: -0.636 GC content %: 45.695 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20902700.13 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET2Gv20902700.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET2Gv20902700.14 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET2Gv20902700.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET2Gv20902700.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET2Gv20902700.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET2Gv20902700.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET2Gv20902700.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET2Gv20902700.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET2Gv20902700.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
