Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20914300 [ AET2Gv20914300] |
2D | 523350611 | 523359485 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20914300.1 AET2Gv20914300.1 |
Low | No | 592 | OG0009829 | Get ORF Coding potential... Type: noncoding Potential: -1.161 Folding energies... MFEI: -30.659 AMFE: -0.641 GC content %: 47.804 | |
Atauschii_AET2Gv20914300.7 AET2Gv20914300.7 |
Low | No | 810 | OG0009829 | Get ORF Coding potential... Type: noncoding Potential: -0.378 Folding energies... MFEI: -28.778 AMFE: -0.633 GC content %: 45.432 | |
Atauschii_AET2Gv20914300.8 AET2Gv20914300.8 |
Low | No | 606 | OG0009829 | Get ORF Coding potential... Type: noncoding Potential: -0.088 Folding energies... MFEI: -27.657 AMFE: -0.588 GC content %: 47.030 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET2Gv20914300.7 | SwissProt | 2021-04-01 | P0CS57 | 2.97e-11 |
Atauschii_AET2Gv20914300.8 | SwissProt | 2021-04-01 | P0CS57 | 3.66e-15 |
Atauschii_AET2Gv20914300.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Pao |