Atauschii AET2Gv20914900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20914900 [ AET2Gv20914900] |
2D | 524067787 | 524072347 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20914900.1 AET2Gv20914900.1 |
High | No | 724 | OG0001548 | Get ORF Coding potential... Type: noncoding Potential: -0.500 Folding energies... MFEI: -25.981 AMFE: -0.607 GC content %: 42.818 | |
| Atauschii_AET2Gv20914900.10 AET2Gv20914900.10 |
High | No | 1415 | OG0001548 | Get ORF Coding potential... Type: noncoding Potential: -0.657 Folding energies... MFEI: -22.989 AMFE: -0.638 GC content %: 36.042 | |
| Atauschii_AET2Gv20914900.12 AET2Gv20914900.12 |
High | No | 990 | OG0001548 | Get ORF Coding potential... Type: noncoding Potential: -0.441 Folding energies... MFEI: -23.990 AMFE: -0.677 GC content %: 35.455 | |
| Atauschii_AET2Gv20914900.13 AET2Gv20914900.13 |
High | No | 1216 | OG0001548 | Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -21.431 AMFE: -0.637 GC content %: 33.635 | |
| Atauschii_AET2Gv20914900.14 AET2Gv20914900.14 |
High | No | 979 | OG0001548 | Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -23.095 AMFE: -0.597 GC content %: 38.713 | |
| Atauschii_AET2Gv20914900.15 AET2Gv20914900.15 |
High | No | 1224 | OG0001548 | Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -24.363 AMFE: -0.639 GC content %: 38.154 | |
| Atauschii_AET2Gv20914900.16 AET2Gv20914900.16 |
High | No | 979 | OG0001548 | Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -23.095 AMFE: -0.597 GC content %: 38.713 | |
| Atauschii_AET2Gv20914900.2 AET2Gv20914900.2 |
High | No | 724 | OG0001548 | Get ORF Coding potential... Type: noncoding Potential: -0.500 Folding energies... MFEI: -25.981 AMFE: -0.607 GC content %: 42.818 | |
| Atauschii_AET2Gv20914900.3 AET2Gv20914900.3 |
High | No | 1091 | OG0001548 | Get ORF Coding potential... Type: noncoding Potential: -0.603 Folding energies... MFEI: -27.159 AMFE: -0.628 GC content %: 43.263 | |
| Atauschii_AET2Gv20914900.4 AET2Gv20914900.4 |
High | No | 874 | OG0001548 | Get ORF Coding potential... Type: noncoding Potential: -0.919 Folding energies... MFEI: -26.613 AMFE: -0.606 GC content %: 43.936 | |
| Atauschii_AET2Gv20914900.6 AET2Gv20914900.6 |
High | No | 709 | OG0001548 | Get ORF Coding potential... Type: noncoding Potential: -0.552 Folding energies... MFEI: -25.966 AMFE: -0.602 GC content %: 43.159 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
