Atauschii AET2Gv20916300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20916300 [ AET2Gv20916300] |
2D | 524720065 | 524725347 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20916300.1 AET2Gv20916300.1 |
High | No | 997 | OG0001549 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -29.007 AMFE: -0.587 GC content %: 49.448 | |
| Atauschii_AET2Gv20916300.10 AET2Gv20916300.10 |
High | No | 1288 | OG0001549 | Get ORF Coding potential... Type: noncoding Potential: -1.186 Folding energies... MFEI: -26.514 AMFE: -0.609 GC content %: 43.556 | |
| Atauschii_AET2Gv20916300.11 AET2Gv20916300.11 |
High | No | 3177 | OG0001549 | Get ORF Coding potential... Type: noncoding Potential: -1.266 Folding energies... MFEI: -25.335 AMFE: -0.691 GC content %: 36.670 | |
| Atauschii_AET2Gv20916300.12 AET2Gv20916300.12 |
High | No | 3451 | OG0001549 | Get ORF Coding potential... Type: noncoding Potential: -1.190 Folding energies... MFEI: -24.938 AMFE: -0.686 GC content %: 36.366 | |
| Atauschii_AET2Gv20916300.13 AET2Gv20916300.13 |
High | No | 3133 | OG0001549 | Get ORF Coding potential... Type: noncoding Potential: -1.266 Folding energies... MFEI: -24.794 AMFE: -0.682 GC content %: 36.355 | |
| Atauschii_AET2Gv20916300.14 AET2Gv20916300.14 |
High | No | 645 | OG0071175 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -22.589 AMFE: -0.602 GC content %: 37.519 | |
| Atauschii_AET2Gv20916300.2 AET2Gv20916300.2 |
High | No | 1158 | OG0001549 | Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -28.273 AMFE: -0.580 GC content %: 48.705 | |
| Atauschii_AET2Gv20916300.3 AET2Gv20916300.3 |
High | No | 1266 | OG0001549 | Get ORF Coding potential... Type: noncoding Potential: -1.184 Folding energies... MFEI: -27.780 AMFE: -0.581 GC content %: 47.788 | |
| Atauschii_AET2Gv20916300.4 AET2Gv20916300.4 |
High | No | 1409 | OG0001549 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -27.239 AMFE: -0.624 GC content %: 43.648 | |
| Atauschii_AET2Gv20916300.5 AET2Gv20916300.5 |
High | No | 1010 | OG0001549 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -29.673 AMFE: -0.645 GC content %: 46.040 | |
| Atauschii_AET2Gv20916300.6 AET2Gv20916300.6 |
High | No | 2107 | OG0001549 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -26.497 AMFE: -0.665 GC content %: 39.867 | |
| Atauschii_AET2Gv20916300.9 AET2Gv20916300.9 |
High | No | 1238 | OG0001549 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -27.698 AMFE: -0.640 GC content %: 43.296 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
