GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv20927800 [ AET2Gv20927800]	2D	530394946	530608500	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv20927800.1 AET2Gv20927800.1	High	No	618	OG0006859		Get ORF Coding potential... Type: noncoding Potential: -0.811 Folding energies... MFEI: -33.576 AMFE: -0.619 GC content %: 54.207
Atauschii_AET2Gv20927800.2 AET2Gv20927800.2	High	No	818	OG0006859		Get ORF Coding potential... Type: noncoding Potential: -0.872 Folding energies... MFEI: -32.616 AMFE: -0.643 GC content %: 50.733
Atauschii_AET2Gv20927800.3 AET2Gv20927800.3	High	No	271	OG0071200		Get ORF Coding potential... Type: noncoding Potential: -1.527 Folding energies... MFEI: -21.218 AMFE: -0.509 GC content %: 41.697
Atauschii_AET2Gv20927800.4 AET2Gv20927800.4	High	No	817	OG0001885		Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -31.053 AMFE: -0.604 GC content %: 51.408
Atauschii_AET2Gv20927800.5 AET2Gv20927800.5	High	No	510	OG0001885		Get ORF Coding potential... Type: noncoding Potential: -0.877 Folding energies... MFEI: -30.882 AMFE: -0.573 GC content %: 53.922

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).