GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv20999100 [ AET2Gv20999100]	2D	558618060	558621160	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv20999100.4 AET2Gv20999100.4	High	No	420	OG0071337		Get ORF Coding potential... Type: noncoding Potential: -1.327 Folding energies... MFEI: -22.262 AMFE: -0.640 GC content %: 34.762
Atauschii_AET2Gv20999100.6 AET2Gv20999100.6	High	No	621	OG0024803		Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -28.245 AMFE: -0.654 GC content %: 43.156
Atauschii_AET2Gv20999100.7 AET2Gv20999100.7	High	No	507	OG0024803		Get ORF Coding potential... Type: noncoding Potential: -1.229 Folding energies... MFEI: -28.639 AMFE: -0.669 GC content %: 42.801

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).