GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv21026900 [ AET2Gv21026900]	2D	568256163	568541795	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv21026900.2 AET2Gv21026900.2	Low	No	808	OG0016088		Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -27.649 AMFE: -0.585 GC content %: 47.277
Atauschii_AET2Gv21026900.6 AET2Gv21026900.6	High	No	822	OG0016088		Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -26.983 AMFE: -0.595 GC content %: 45.377
Atauschii_AET2Gv21026900.7 AET2Gv21026900.7	High	No	877	OG0016088		Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -26.465 AMFE: -0.617 GC content %: 42.873

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET2Gv21026900.2	RepBase (RepeatMasker)	2014-01-31	DNA/TcMar-Stowaway

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).