GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv21027500 [ AET2Gv21027500]	2D	568746802	568907067	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv21027500.16 AET2Gv21027500.16	Low	No	307	OG0071394		Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -22.443 AMFE: -0.499 GC content %: 44.951
Atauschii_AET2Gv21027500.20 AET2Gv21027500.20	High	No	710	OG0016089		Get ORF Coding potential... Type: noncoding Potential: -0.917 Folding energies... MFEI: -34.986 AMFE: -0.639 GC content %: 54.789
Atauschii_AET2Gv21027500.22 AET2Gv21027500.22	High	No	634	OG0016089		Get ORF Coding potential... Type: noncoding Potential: -0.874 Folding energies... MFEI: -35.789 AMFE: -0.643 GC content %: 55.678
Atauschii_AET2Gv21027500.23 AET2Gv21027500.23	High	No	459	OG0016089		Get ORF Coding potential... Type: noncoding Potential: -0.888 Folding energies... MFEI: -37.495 AMFE: -0.635 GC content %: 59.041

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET2Gv21027500.16	SwissProt	2021-04-01	Q75HY5	4.84e-5

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).