Atauschii AET2Gv21045600
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv21045600 [ AET2Gv21045600] |
2D | 575257404 | 575271501 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv21045600.20 AET2Gv21045600.20 |
Low | No | 1622 | OG0071419 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -31.671 AMFE: -0.665 GC content %: 47.657 | |
| Atauschii_AET2Gv21045600.28 AET2Gv21045600.28 |
Low | No | 3075 | OG0004694 | Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -28.585 AMFE: -0.692 GC content %: 41.333 | |
| Atauschii_AET2Gv21045600.29 AET2Gv21045600.29 |
High | No | 1440 | OG0004694 | Get ORF Coding potential... Type: noncoding Potential: -1.114 Folding energies... MFEI: -29.986 AMFE: -0.694 GC content %: 43.194 | |
| Atauschii_AET2Gv21045600.30 AET2Gv21045600.30 |
Low | No | 3808 | OG0004694 | Get ORF Coding potential... Type: noncoding Potential: -1.266 Folding energies... MFEI: -26.148 AMFE: -0.668 GC content %: 39.128 | |
| Atauschii_AET2Gv21045600.31 AET2Gv21045600.31 |
High | No | 1193 | OG0004694 | Get ORF Coding potential... Type: noncoding Potential: -1.094 Folding energies... MFEI: -27.728 AMFE: -0.679 GC content %: 40.821 | |
| Atauschii_AET2Gv21045600.32 AET2Gv21045600.32 |
Low | No | 2968 | OG0004694 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -27.409 AMFE: -0.685 GC content %: 39.993 | |
| Atauschii_AET2Gv21045600.33 AET2Gv21045600.33 |
High | No | 593 | OG0004694 | Get ORF Coding potential... Type: noncoding Potential: -1.007 Folding energies... MFEI: -28.347 AMFE: -0.662 GC content %: 42.833 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv21045600.32 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET2Gv21045600.20 | SwissProt | 2021-04-01 | Q9LZA6 | 8.56e-5 |
| Atauschii_AET2Gv21045600.28 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET2Gv21045600.30 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
