Atauschii AET2Gv21062000
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv21062000 [ AET2Gv21062000] |
2D | 580866717 | 580869869 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv21062000.1 AET2Gv21062000.1 |
High | No | 850 | OG0000442 | Get ORF Coding potential... Type: noncoding Potential: -0.921 Folding energies... MFEI: -32.282 AMFE: -0.652 GC content %: 49.529 | |
| Atauschii_AET2Gv21062000.10 AET2Gv21062000.10 |
Low | No | 2716 | OG0000442 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -35.368 AMFE: -0.723 GC content %: 48.932 | |
| Atauschii_AET2Gv21062000.11 AET2Gv21062000.11 |
Low | No | 1750 | OG0000442 | Get ORF Coding potential... Type: noncoding Potential: -0.942 Folding energies... MFEI: -28.640 AMFE: -0.704 GC content %: 40.686 | |
| Atauschii_AET2Gv21062000.12 AET2Gv21062000.12 |
High | No | 1191 | OG0000442 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -42.519 AMFE: -0.705 GC content %: 60.285 | |
| Atauschii_AET2Gv21062000.13 AET2Gv21062000.13 |
Low | No | 770 | OG0000442 | Get ORF Coding potential... Type: noncoding Potential: -0.888 Folding energies... MFEI: -27.961 AMFE: -0.641 GC content %: 43.636 | |
| Atauschii_AET2Gv21062000.2 AET2Gv21062000.2 |
Low | No | 1990 | OG0000442 | Get ORF Coding potential... Type: noncoding Potential: -1.237 Folding energies... MFEI: -28.975 AMFE: -0.711 GC content %: 40.754 | |
| Atauschii_AET2Gv21062000.3 AET2Gv21062000.3 |
Low | No | 847 | OG0000442 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -30.933 AMFE: -0.639 GC content %: 48.406 | |
| Atauschii_AET2Gv21062000.4 AET2Gv21062000.4 |
High | No | 1749 | OG0000442 | Get ORF Coding potential... Type: noncoding Potential: -1.264 Folding energies... MFEI: -27.696 AMFE: -0.688 GC content %: 40.252 | |
| Atauschii_AET2Gv21062000.5 AET2Gv21062000.5 |
High | No | 1178 | OG0000442 | Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -42.903 AMFE: -0.710 GC content %: 60.441 | |
| Atauschii_AET2Gv21062000.6 AET2Gv21062000.6 |
Low | No | 1702 | OG0000442 | Get ORF Coding potential... Type: noncoding Potential: -1.109 Folding energies... MFEI: -27.703 AMFE: -0.687 GC content %: 40.306 | |
| Atauschii_AET2Gv21062000.7 AET2Gv21062000.7 |
Low | No | 2740 | OG0000442 | Get ORF Coding potential... Type: noncoding Potential: -0.861 Folding energies... MFEI: -34.726 AMFE: -0.715 GC content %: 48.577 | |
| Atauschii_AET2Gv21062000.8 AET2Gv21062000.8 |
Low | No | 2864 | OG0000442 | Get ORF Coding potential... Type: noncoding Potential: -0.177 Folding energies... MFEI: -34.441 AMFE: -0.717 GC content %: 48.045 | |
| Atauschii_AET2Gv21062000.9 AET2Gv21062000.9 |
Low | No | 2774 | OG0000442 | Get ORF Coding potential... Type: noncoding Potential: -0.862 Folding energies... MFEI: -34.831 AMFE: -0.717 GC content %: 48.594 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv21062000.7 | SwissProt | 2021-04-01 | Q2QXC6 | 5.63e-6 |
| Atauschii_AET2Gv21062000.11 | SwissProt | 2021-04-01 | Q2QXC6 | 1.79e-9 |
| Atauschii_AET2Gv21062000.8 | SwissProt | 2021-04-01 | Q2QXC6 | 8.93e-11 |
| Atauschii_AET2Gv21062000.13 | SwissProt | 2021-04-01 | Q2QXC6 | 4.46e-8 |
| Atauschii_AET2Gv21062000.9 | SwissProt | 2021-04-01 | Q2QXC6 | 3.69e-8 |
| Atauschii_AET2Gv21062000.2 | SwissProt | 2021-04-01 | Q2QXC6 | 5.52e-4 |
| Atauschii_AET2Gv21062000.11 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET2Gv21062000.3 | SwissProt | 2021-04-01 | Q2QXC6 | 1.62e-6 |
| Atauschii_AET2Gv21062000.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET2Gv21062000.6 | SwissProt | 2021-04-01 | Q2QXC6 | 2.93e-6 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
