GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv21069900 [ AET2Gv21069900]	2D	584049967	584117066	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv21069900.14 AET2Gv21069900.14	High	No	737	OG0006866		Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -24.410 AMFE: -0.575 GC content %: 42.469
Atauschii_AET2Gv21069900.20 AET2Gv21069900.20	High	No	974	OG0006866		Get ORF Coding potential... Type: noncoding Potential: -0.817 Folding energies... MFEI: -29.045 AMFE: -0.644 GC content %: 45.072
Atauschii_AET2Gv21069900.22 AET2Gv21069900.22	High	No	831	OG0006866		Get ORF Coding potential... Type: noncoding Potential: -0.798 Folding energies... MFEI: -31.324 AMFE: -0.667 GC content %: 46.931
Atauschii_AET2Gv21069900.23 AET2Gv21069900.23	High	No	817	OG0006866		Get ORF Coding potential... Type: noncoding Potential: -0.796 Folding energies... MFEI: -30.061 AMFE: -0.653 GC content %: 46.022
Atauschii_AET2Gv21069900.4 AET2Gv21069900.4	High	No	532	OG0006866		Get ORF Coding potential... Type: noncoding Potential: -1.184 Folding energies... MFEI: -23.308 AMFE: -0.569 GC content %: 40.977

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).