Atauschii AET2Gv21095400
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv21095400 [ AET2Gv21095400] |
2D | 592499532 | 592507037 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv21095400.18 AET2Gv21095400.18 |
Low | No | 1174 | OG0001294 | Get ORF Coding potential... Type: noncoding Potential: -0.383 Folding energies... MFEI: -28.237 AMFE: -0.659 GC content %: 42.845 | |
| Atauschii_AET2Gv21095400.22 AET2Gv21095400.22 |
Low | Yes | 3010 | OG0001294 | Get ORF Coding potential... Type: noncoding Potential: -0.998 Folding energies... MFEI: -28.439 AMFE: -0.767 GC content %: 37.076 | |
| Atauschii_AET2Gv21095400.23 AET2Gv21095400.23 |
Low | Yes | 2736 | OG0001294 | Get ORF Coding potential... Type: noncoding Potential: -0.992 Folding energies... MFEI: -27.679 AMFE: -0.751 GC content %: 36.879 | |
| Atauschii_AET2Gv21095400.25 AET2Gv21095400.25 |
Low | Yes | 1026 | OG0001294 | Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -29.288 AMFE: -0.717 GC content %: 40.838 | |
| Atauschii_AET2Gv21095400.26 AET2Gv21095400.26 |
Low | Yes | 1118 | OG0001294 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -29.526 AMFE: -0.711 GC content %: 41.503 | |
| Atauschii_AET2Gv21095400.27 AET2Gv21095400.27 |
Low | Yes | 2557 | OG0001294 | Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -27.165 AMFE: -0.745 GC content %: 36.449 | |
| Atauschii_AET2Gv21095400.28 AET2Gv21095400.28 |
Low | Yes | 2230 | OG0001294 | Get ORF Coding potential... Type: noncoding Potential: -0.533 Folding energies... MFEI: -27.646 AMFE: -0.756 GC content %: 36.547 | |
| Atauschii_AET2Gv21095400.30 AET2Gv21095400.30 |
Low | Yes | 1530 | OG0001294 | Get ORF Coding potential... Type: noncoding Potential: -0.639 Folding energies... MFEI: -26.641 AMFE: -0.748 GC content %: 35.621 | |
| Atauschii_AET2Gv21095400.32 AET2Gv21095400.32 |
Low | No | 1274 | OG0001294 | Get ORF Coding potential... Type: noncoding Potential: -0.805 Folding energies... MFEI: -26.499 AMFE: -0.654 GC content %: 40.502 | |
| Atauschii_AET2Gv21095400.33 AET2Gv21095400.33 |
High | No | 810 | OG0001294 | Get ORF Coding potential... Type: noncoding Potential: -0.746 Folding energies... MFEI: -26.519 AMFE: -0.647 GC content %: 40.988 | |
| Atauschii_AET2Gv21095400.34 AET2Gv21095400.34 |
Low | Yes | 1250 | OG0001294 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -28.720 AMFE: -0.694 GC content %: 41.360 | |
| Atauschii_AET2Gv21095400.35 AET2Gv21095400.35 |
High | No | 890 | OG0001294 | Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -25.517 AMFE: -0.624 GC content %: 40.899 | |
| Atauschii_AET2Gv21095400.9 AET2Gv21095400.9 |
Low | No | 738 | OG0071492 | Get ORF Coding potential... Type: noncoding Potential: -0.729 Folding energies... MFEI: -29.756 AMFE: -0.648 GC content %: 45.935 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv21095400.28 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1; DNA/TcMar-Stowaway | |
| Atauschii_AET2Gv21095400.26 | SwissProt | 2021-04-01 | Q336V9 | 2.63e-4 |
| Atauschii_AET2Gv21095400.22 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1; DNA/TcMar-Stowaway | |
| Atauschii_AET2Gv21095400.26 | Rfam | 14.6 | MIR1122 | 2.5e-16 |
| Atauschii_AET2Gv21095400.30 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET2Gv21095400.34 | SwissProt | 2021-04-01 | Q336V9 | 3.2e-4 |
| Atauschii_AET2Gv21095400.23 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1; DNA/TcMar-Stowaway | |
| Atauschii_AET2Gv21095400.27 | Rfam | 14.6 | MIR1122 | 1.5e-12 |
| Atauschii_AET2Gv21095400.32 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET2Gv21095400.9 | SwissProt | 2021-04-01 | Q96Q27 | 1.9e-10 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
