Atauschii AET2Gv21106200
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv21106200 [ AET2Gv21106200] |
2D | 597278175 | 597298556 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv21106200.1 AET2Gv21106200.1 |
Low | No | 2907 | OG0001552 | Get ORF Coding potential... Type: noncoding Potential: -0.118 Folding energies... MFEI: -27.210 AMFE: -0.664 GC content %: 41.004 | |
| Atauschii_AET2Gv21106200.10 AET2Gv21106200.10 |
Low | No | 3137 | OG0001552 | Get ORF Coding potential... Type: noncoding Potential: -0.133 Folding energies... MFEI: -28.326 AMFE: -0.686 GC content %: 41.281 | |
| Atauschii_AET2Gv21106200.13 AET2Gv21106200.13 |
Low | No | 3741 | OG0001552 | Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -27.600 AMFE: -0.690 GC content %: 40.016 | |
| Atauschii_AET2Gv21106200.15 AET2Gv21106200.15 |
High | No | 1608 | OG0001552 | Get ORF Coding potential... Type: noncoding Potential: -1.130 Folding energies... MFEI: -25.958 AMFE: -0.671 GC content %: 38.682 | |
| Atauschii_AET2Gv21106200.16 AET2Gv21106200.16 |
High | No | 1616 | OG0001552 | Get ORF Coding potential... Type: noncoding Potential: -1.130 Folding energies... MFEI: -26.083 AMFE: -0.674 GC content %: 38.676 | |
| Atauschii_AET2Gv21106200.17 AET2Gv21106200.17 |
Low | No | 1681 | OG0001552 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -27.222 AMFE: -0.675 GC content %: 40.333 | |
| Atauschii_AET2Gv21106200.19 AET2Gv21106200.19 |
Low | No | 4272 | OG0001552 | Get ORF Coding potential... Type: noncoding Potential: -0.163 Folding energies... MFEI: -27.767 AMFE: -0.692 GC content %: 40.122 | |
| Atauschii_AET2Gv21106200.2 AET2Gv21106200.2 |
Low | No | 4491 | OG0001552 | Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -27.484 AMFE: -0.675 GC content %: 40.704 | |
| Atauschii_AET2Gv21106200.20 AET2Gv21106200.20 |
Low | No | 3902 | OG0001552 | Get ORF Coding potential... Type: noncoding Potential: -0.155 Folding energies... MFEI: -27.719 AMFE: -0.688 GC content %: 40.261 | |
| Atauschii_AET2Gv21106200.4 AET2Gv21106200.4 |
Low | No | 4105 | OG0001552 | Get ORF Coding potential... Type: noncoding Potential: -1.025 Folding energies... MFEI: -27.167 AMFE: -0.682 GC content %: 39.805 | |
| Atauschii_AET2Gv21106200.9 AET2Gv21106200.9 |
Low | No | 3229 | OG0001552 | Get ORF Coding potential... Type: noncoding Potential: -0.152 Folding energies... MFEI: -28.260 AMFE: -0.687 GC content %: 41.158 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv21106200.4 | SwissProt | 2021-04-01 | Q68Y52 | 8.26e-7 |
| Atauschii_AET2Gv21106200.13 | SwissProt | 2021-04-01 | Q68Y52 | 2.62e-6 |
| Atauschii_AET2Gv21106200.9 | SwissProt | 2021-04-01 | Q68Y52 | 6.3e-12 |
| Atauschii_AET2Gv21106200.17 | SwissProt | 2021-04-01 | Q68Y52 | 2.81e-7 |
| Atauschii_AET2Gv21106200.19 | SwissProt | 2021-04-01 | Q68Y52 | 2.17e-12 |
| Atauschii_AET2Gv21106200.2 | SwissProt | 2021-04-01 | Q68Y52 | 9.04e-7 |
| Atauschii_AET2Gv21106200.1 | SwissProt | 2021-04-01 | Q68Y52 | 1.55e-12 |
| Atauschii_AET2Gv21106200.20 | SwissProt | 2021-04-01 | Q68Y52 | 1.96e-12 |
| Atauschii_AET2Gv21106200.10 | SwissProt | 2021-04-01 | Q68Y52 | 2.99e-12 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
