Atauschii AET2Gv21141900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv21141900 [ AET2Gv21141900] |
2D | 608016155 | 608164331 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv21141900.20 AET2Gv21141900.20 |
Low | No | 962 | OG0003706 | Get ORF Coding potential... Type: coding Potential: 0.183 Folding energies... MFEI: -28.711 AMFE: -0.647 GC content %: 44.387 | |
| Atauschii_AET2Gv21141900.21 AET2Gv21141900.21 |
High | No | 830 | OG0003706 | Get ORF Coding potential... Type: noncoding Potential: -0.355 Folding energies... MFEI: -27.554 AMFE: -0.618 GC content %: 44.578 | |
| Atauschii_AET2Gv21141900.22 AET2Gv21141900.22 |
Low | No | 837 | OG0003706 | Get ORF Coding potential... Type: coding Potential: 0.071 Folding energies... MFEI: -28.124 AMFE: -0.628 GC content %: 44.803 | |
| Atauschii_AET2Gv21141900.25 AET2Gv21141900.25 |
High | No | 496 | OG0003706 | Get ORF Coding potential... Type: noncoding Potential: -0.606 Folding energies... MFEI: -25.524 AMFE: -0.581 GC content %: 43.952 | |
| Atauschii_AET2Gv21141900.26 AET2Gv21141900.26 |
High | No | 559 | OG0071566 | Get ORF Coding potential... Type: noncoding Potential: -0.739 Folding energies... MFEI: -26.225 AMFE: -0.582 GC content %: 45.081 | |
| Atauschii_AET2Gv21141900.6 AET2Gv21141900.6 |
High | No | 792 | OG0003706 | Get ORF Coding potential... Type: noncoding Potential: -0.159 Folding energies... MFEI: -28.396 AMFE: -0.628 GC content %: 45.202 | |
| Atauschii_AET2Gv21141900.7 AET2Gv21141900.7 |
High | No | 766 | OG0003706 | Get ORF Coding potential... Type: noncoding Potential: -0.578 Folding energies... MFEI: -27.546 AMFE: -0.615 GC content %: 44.778 | |
| Atauschii_AET2Gv21141900.8 AET2Gv21141900.8 |
High | No | 639 | OG0003706 | Get ORF Coding potential... Type: noncoding Potential: -0.349 Folding energies... MFEI: -28.435 AMFE: -0.618 GC content %: 46.009 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
