GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv21152100 [ AET2Gv21152100]	2D	611383000	611555863	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv21152100.1 AET2Gv21152100.1	High	No	605	OG0071580		Get ORF Coding potential... Type: noncoding Potential: -0.659 Folding energies... MFEI: -32.975 AMFE: -0.652 GC content %: 50.579
Atauschii_AET2Gv21152100.2 AET2Gv21152100.2	High	No	541	OG0024841		Get ORF Coding potential... Type: noncoding Potential: -0.404 Folding energies... MFEI: -36.543 AMFE: -0.670 GC content %: 54.529
Atauschii_AET2Gv21152100.3 AET2Gv21152100.3	High	No	734	OG0024841		Get ORF Coding potential... Type: noncoding Potential: -0.492 Folding energies... MFEI: -31.853 AMFE: -0.655 GC content %: 48.638

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).