Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv21161300 [ AET2Gv21161300] |
2D | 614489879 | 614490834 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv21161300.1 AET2Gv21161300.1 |
Low | No | 270 | OG0000014 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -31.333 AMFE: -0.646 GC content %: 48.519 | |
Atauschii_AET2Gv21161300.3 AET2Gv21161300.3 |
Low | No | 310 | OG0000860 | Get ORF Coding potential... Type: noncoding Potential: -0.983 Folding energies... MFEI: -30.065 AMFE: -0.661 GC content %: 45.484 | |
Atauschii_AET2Gv21161300.4 AET2Gv21161300.4 |
Low | No | 234 | OG0000318 | Get ORF Coding potential... Type: noncoding Potential: -0.756 Folding energies... MFEI: -27.521 AMFE: -0.631 GC content %: 43.590 | |
Atauschii_AET2Gv21161300.5 AET2Gv21161300.5 |
Low | No | 247 | OG0000318 | Get ORF Coding potential... Type: noncoding Potential: -0.849 Folding energies... MFEI: -29.757 AMFE: -0.634 GC content %: 46.964 | |
Atauschii_AET2Gv21161300.6 AET2Gv21161300.6 |
Low | No | 233 | OG0071592 | Get ORF Coding potential... Type: noncoding Potential: -1.023 Folding energies... MFEI: -30.644 AMFE: -0.621 GC content %: 49.356 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET2Gv21161300.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
Atauschii_AET2Gv21161300.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
Atauschii_AET2Gv21161300.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
Atauschii_AET2Gv21161300.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
Atauschii_AET2Gv21161300.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger |