GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv21164600 [ AET2Gv21164600]	2D	615699887	615710047	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv21164600.29 AET2Gv21164600.29	Low	No	1317	OG0024848		Get ORF Coding potential... Type: noncoding Potential: -0.449 Folding energies... MFEI: -29.119 AMFE: -0.686 GC content %: 42.445
Atauschii_AET2Gv21164600.30 AET2Gv21164600.30	Low	No	1131	OG0024848		Get ORF Coding potential... Type: noncoding Potential: -0.425 Folding energies... MFEI: -29.328 AMFE: -0.681 GC content %: 43.059
Atauschii_AET2Gv21164600.34 AET2Gv21164600.34	High	No	1764	OG0024849		Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -29.966 AMFE: -0.655 GC content %: 45.748
Atauschii_AET2Gv21164600.35 AET2Gv21164600.35	High	No	1112	OG0024849		Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -28.921 AMFE: -0.664 GC content %: 43.525

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET2Gv21164600.29	SwissProt	2021-04-01	P94479	2.07e-15
Atauschii_AET2Gv21164600.30	SwissProt	2021-04-01	P94479	1.24e-15

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).