GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv21180700 [ AET2Gv21180700]	2D	618533182	618577248	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv21180700.2 AET2Gv21180700.2	High	No	453	OG0009855		Get ORF Coding potential... Type: noncoding Potential: -0.343 Folding energies... MFEI: -34.459 AMFE: -0.627 GC content %: 54.967
Atauschii_AET2Gv21180700.4 AET2Gv21180700.4	High	No	890	OG0009855		Get ORF Coding potential... Type: noncoding Potential: -0.004 Folding energies... MFEI: -35.360 AMFE: -0.624 GC content %: 56.629
Atauschii_AET2Gv21180700.5 AET2Gv21180700.5	High	No	922	OG0009855		Get ORF Coding potential... Type: noncoding Potential: -0.132 Folding energies... MFEI: -34.772 AMFE: -0.640 GC content %: 54.338

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).