Atauschii AET2Gv21282600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv21282600 [ AET2Gv21282600] |
2D | 644805061 | 644812507 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv21282600.1 AET2Gv21282600.1 |
High | No | 1038 | OG0003708 | Get ORF Coding potential... Type: noncoding Potential: -0.629 Folding energies... MFEI: -35.145 AMFE: -0.638 GC content %: 55.106 | |
| Atauschii_AET2Gv21282600.10 AET2Gv21282600.10 |
High | No | 994 | OG0003708 | Get ORF Coding potential... Type: noncoding Potential: -0.852 Folding energies... MFEI: -27.626 AMFE: -0.587 GC content %: 47.082 | |
| Atauschii_AET2Gv21282600.12 AET2Gv21282600.12 |
High | No | 547 | OG0071790 | Get ORF Coding potential... Type: noncoding Potential: -0.708 Folding energies... MFEI: -22.395 AMFE: -0.547 GC content %: 40.951 | |
| Atauschii_AET2Gv21282600.13 AET2Gv21282600.13 |
High | No | 1380 | OG0003708 | Get ORF Coding potential... Type: noncoding Potential: -0.840 Folding energies... MFEI: -28.435 AMFE: -0.612 GC content %: 46.449 | |
| Atauschii_AET2Gv21282600.14 AET2Gv21282600.14 |
High | No | 847 | OG0003708 | Get ORF Coding potential... Type: noncoding Potential: -0.717 Folding energies... MFEI: -28.264 AMFE: -0.565 GC content %: 50.059 | |
| Atauschii_AET2Gv21282600.4 AET2Gv21282600.4 |
High | No | 1028 | OG0003708 | Get ORF Coding potential... Type: noncoding Potential: -0.626 Folding energies... MFEI: -34.309 AMFE: -0.629 GC content %: 54.572 | |
| Atauschii_AET2Gv21282600.8 AET2Gv21282600.8 |
High | No | 1842 | OG0003708 | Get ORF Coding potential... Type: noncoding Potential: -0.908 Folding energies... MFEI: -26.433 AMFE: -0.623 GC content %: 42.400 | |
| Atauschii_AET2Gv21282600.9 AET2Gv21282600.9 |
High | No | 987 | OG0003708 | Get ORF Coding potential... Type: noncoding Potential: -0.884 Folding energies... MFEI: -29.159 AMFE: -0.614 GC content %: 47.518 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
