Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv21288600 [ AET2Gv21288600] |
2D | 646132513 | 646174367 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv21288600.1 AET2Gv21288600.1 |
Low | No | 675 | OG0024887 | Get ORF Coding potential... Type: noncoding Potential: -0.339 Folding energies... MFEI: -36.933 AMFE: -0.654 GC content %: 56.444 | |
Atauschii_AET2Gv21288600.12 AET2Gv21288600.12 |
Low | No | 714 | OG0024887 | Get ORF Coding potential... Type: noncoding Potential: -0.338 Folding energies... MFEI: -35.644 AMFE: -0.646 GC content %: 55.182 | |
Atauschii_AET2Gv21288600.3 AET2Gv21288600.3 |
Low | No | 956 | OG0024888 | Get ORF Coding potential... Type: noncoding Potential: -0.096 Folding energies... MFEI: -30.847 AMFE: -0.631 GC content %: 48.849 | |
Atauschii_AET2Gv21288600.4 AET2Gv21288600.4 |
Low | No | 673 | OG0024888 | Get ORF Coding potential... Type: noncoding Potential: -0.062 Folding energies... MFEI: -32.333 AMFE: -0.644 GC content %: 50.223 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET2Gv21288600.3 | SwissProt | 2021-04-01 | Q9SL41 | 1.64e-20 |
Atauschii_AET2Gv21288600.4 | SwissProt | 2021-04-01 | Q9SL41 | 1.45e-21 |
Atauschii_AET2Gv21288600.1 | SwissProt | 2021-04-01 | Q9C8W9 | 6.35e-4 |
Atauschii_AET2Gv21288600.12 | SwissProt | 2021-04-01 | Q9C8W9 | 1.82e-4 |