GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv21292800 [ AET2Gv21292800]	2D	647424792	647552884	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv21292800.2 AET2Gv21292800.2	High	No	837	OG0016124		Get ORF Coding potential... Type: noncoding Potential: -0.708 Folding energies... MFEI: -28.554 AMFE: -0.673 GC content %: 42.413
Atauschii_AET2Gv21292800.3 AET2Gv21292800.3	High	No	917	OG0016124		Get ORF Coding potential... Type: noncoding Potential: -0.487 Folding energies... MFEI: -27.884 AMFE: -0.664 GC content %: 41.985
Atauschii_AET2Gv21292800.4 AET2Gv21292800.4	High	No	1019	OG0016124		Get ORF Coding potential... Type: noncoding Potential: -0.457 Folding energies... MFEI: -27.723 AMFE: -0.657 GC content %: 42.198

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).