Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv21302000 [ AET2Gv21302000] |
2D | 649900999 | 649906916 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv21302000.13 AET2Gv21302000.13 |
High | No | 335 | OG0071822 | Get ORF Coding potential... Type: noncoding Potential: -1.114 Folding energies... MFEI: -33.731 AMFE: -0.720 GC content %: 46.866 | |
Atauschii_AET2Gv21302000.5 AET2Gv21302000.5 |
Low | No | 994 | OG0009868 | Get ORF Coding potential... Type: noncoding Potential: -0.053 Folding energies... MFEI: -25.594 AMFE: -0.483 GC content %: 53.018 | |
Atauschii_AET2Gv21302000.7 AET2Gv21302000.7 |
High | No | 870 | OG0009868 | Get ORF Coding potential... Type: noncoding Potential: -0.815 Folding energies... MFEI: -25.839 AMFE: -0.490 GC content %: 52.759 | |
Atauschii_AET2Gv21302000.8 AET2Gv21302000.8 |
High | No | 869 | OG0009868 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -25.938 AMFE: -0.492 GC content %: 52.704 | |
Atauschii_AET2Gv21302000.9 AET2Gv21302000.9 |
High | No | 869 | OG0009868 | Get ORF Coding potential... Type: noncoding Potential: -0.839 Folding energies... MFEI: -25.593 AMFE: -0.491 GC content %: 52.129 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET2Gv21302000.5 | SwissProt | 2021-04-01 | Q66GI4 | 4.46e-12 |