Atauschii AET2Gv21304400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv21304400 [ AET2Gv21304400] |
2D | 650388839 | 650395875 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv21304400.10 AET2Gv21304400.10 |
Low | No | 697 | OG0001554 | Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -32.783 AMFE: -0.574 GC content %: 57.102 | |
| Atauschii_AET2Gv21304400.11 AET2Gv21304400.11 |
Low | No | 1483 | OG0001554 | Get ORF Coding potential... Type: noncoding Potential: -1.267 Folding energies... MFEI: -29.332 AMFE: -0.603 GC content %: 48.618 | |
| Atauschii_AET2Gv21304400.12 AET2Gv21304400.12 |
Low | No | 1447 | OG0001554 | Get ORF Coding potential... Type: noncoding Potential: -0.951 Folding energies... MFEI: -29.157 AMFE: -0.596 GC content %: 48.929 | |
| Atauschii_AET2Gv21304400.13 AET2Gv21304400.13 |
Low | No | 1023 | OG0001554 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -32.268 AMFE: -0.605 GC content %: 53.372 | |
| Atauschii_AET2Gv21304400.14 AET2Gv21304400.14 |
Low | No | 1243 | OG0001554 | Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -31.464 AMFE: -0.611 GC content %: 51.488 | |
| Atauschii_AET2Gv21304400.16 AET2Gv21304400.16 |
Low | No | 930 | OG0001554 | Get ORF Coding potential... Type: noncoding Potential: -1.184 Folding energies... MFEI: -33.860 AMFE: -0.603 GC content %: 56.129 | |
| Atauschii_AET2Gv21304400.18 AET2Gv21304400.18 |
Low | No | 1154 | OG0001554 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -31.031 AMFE: -0.659 GC content %: 47.054 | |
| Atauschii_AET2Gv21304400.2 AET2Gv21304400.2 |
Low | No | 1348 | OG0001554 | Get ORF Coding potential... Type: noncoding Potential: -1.227 Folding energies... MFEI: -30.482 AMFE: -0.617 GC content %: 49.407 | |
| Atauschii_AET2Gv21304400.20 AET2Gv21304400.20 |
Low | No | 445 | OG0071825 | Get ORF Coding potential... Type: noncoding Potential: -0.352 Folding energies... MFEI: -26.787 AMFE: -0.618 GC content %: 43.371 | |
| Atauschii_AET2Gv21304400.21 AET2Gv21304400.21 |
High | No | 428 | OG0071826 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -30.280 AMFE: -0.645 GC content %: 46.963 | |
| Atauschii_AET2Gv21304400.22 AET2Gv21304400.22 |
High | No | 542 | OG0071827 | Get ORF Coding potential... Type: noncoding Potential: -1.189 Folding energies... MFEI: -20.572 AMFE: -0.575 GC content %: 35.793 | |
| Atauschii_AET2Gv21304400.24 AET2Gv21304400.24 |
High | No | 418 | OG0001554 | Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -32.656 AMFE: -0.669 GC content %: 48.804 | |
| Atauschii_AET2Gv21304400.3 AET2Gv21304400.3 |
Low | No | 555 | OG0071828 | Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -33.604 AMFE: -0.547 GC content %: 61.441 | |
| Atauschii_AET2Gv21304400.4 AET2Gv21304400.4 |
Low | No | 954 | OG0001554 | Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -31.971 AMFE: -0.569 GC content %: 56.184 | |
| Atauschii_AET2Gv21304400.9 AET2Gv21304400.9 |
Low | No | 1813 | OG0001554 | Get ORF Coding potential... Type: noncoding Potential: -1.282 Folding energies... MFEI: -28.687 AMFE: -0.613 GC content %: 46.828 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv21304400.4 | SwissProt | 2021-04-01 | Q6K9U2 | 5.64e-8 |
| Atauschii_AET2Gv21304400.14 | SwissProt | 2021-04-01 | Q6K9U2 | 9.48e-8 |
| Atauschii_AET2Gv21304400.9 | SwissProt | 2021-04-01 | Q6K9U2 | 1.2e-5 |
| Atauschii_AET2Gv21304400.16 | SwissProt | 2021-04-01 | Q6K9U2 | 5.83e-8 |
| Atauschii_AET2Gv21304400.10 | SwissProt | 2021-04-01 | Q6K9U2 | 2.01e-6 |
| Atauschii_AET2Gv21304400.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1 | |
| Atauschii_AET2Gv21304400.18 | SwissProt | 2021-04-01 | Q6K9U2 | 7.27e-6 |
| Atauschii_AET2Gv21304400.11 | SwissProt | 2021-04-01 | Q6K9U2 | 9.03e-6 |
| Atauschii_AET2Gv21304400.20 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1 | |
| Atauschii_AET2Gv21304400.2 | SwissProt | 2021-04-01 | Q6K9U2 | 1.24e-7 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
