Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv21305100 [ AET2Gv21305100] |
2D | 650489629 | 650508552 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv21305100.17 AET2Gv21305100.17 |
Low | No | 539 | OG0071829 | Get ORF Coding potential... Type: noncoding Potential: -0.687 Folding energies... MFEI: -25.937 AMFE: -0.575 GC content %: 45.083 | |
Atauschii_AET2Gv21305100.18 AET2Gv21305100.18 |
High | No | 743 | OG0071830 | Get ORF Coding potential... Type: noncoding Potential: -0.572 Folding energies... MFEI: -31.602 AMFE: -0.621 GC content %: 50.875 | |
Atauschii_AET2Gv21305100.19 AET2Gv21305100.19 |
High | No | 731 | OG0071831 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -25.882 AMFE: -0.591 GC content %: 43.776 | |
Atauschii_AET2Gv21305100.26 AET2Gv21305100.26 |
High | No | 368 | OG0071832 | Get ORF Coding potential... Type: noncoding Potential: -0.754 Folding energies... MFEI: -29.511 AMFE: -0.631 GC content %: 46.739 | |
Atauschii_AET2Gv21305100.8 AET2Gv21305100.8 |
High | No | 986 | OG0071833 | Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -25.913 AMFE: -0.593 GC content %: 43.712 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET2Gv21305100.17 | SwissProt | 2021-04-01 | Q5PP38 | 3.09e-10 |