Atauschii AET2Gv21305600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv21305600 [ AET2Gv21305600] |
2D | 650609105 | 650755939 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv21305600.1 AET2Gv21305600.1 |
High | No | 463 | OG0002356 | Get ORF Coding potential... Type: noncoding Potential: -0.954 Folding energies... MFEI: -23.996 AMFE: -0.588 GC content %: 40.821 | |
| Atauschii_AET2Gv21305600.2 AET2Gv21305600.2 |
High | No | 427 | OG0002356 | Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -23.560 AMFE: -0.565 GC content %: 41.686 | |
| Atauschii_AET2Gv21305600.3 AET2Gv21305600.3 |
High | No | 260 | OG0002356 | Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -23.346 AMFE: -0.552 GC content %: 42.308 | |
| Atauschii_AET2Gv21305600.4 AET2Gv21305600.4 |
High | No | 318 | OG0002356 | Get ORF Coding potential... Type: noncoding Potential: -1.304 Folding energies... MFEI: -20.472 AMFE: -0.517 GC content %: 39.623 | |
| Atauschii_AET2Gv21305600.5 AET2Gv21305600.5 |
High | No | 599 | OG0002356 | Get ORF Coding potential... Type: noncoding Potential: -0.880 Folding energies... MFEI: -22.337 AMFE: -0.551 GC content %: 40.568 | |
| Atauschii_AET2Gv21305600.6 AET2Gv21305600.6 |
High | No | 338 | OG0002356 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -24.142 AMFE: -0.540 GC content %: 44.675 | |
| Atauschii_AET2Gv21305600.7 AET2Gv21305600.7 |
High | No | 344 | OG0002356 | Get ORF Coding potential... Type: noncoding Potential: -1.289 Folding energies... MFEI: -23.547 AMFE: -0.583 GC content %: 40.407 | |
| Atauschii_AET2Gv21305600.8 AET2Gv21305600.8 |
High | No | 522 | OG0002356 | Get ORF Coding potential... Type: noncoding Potential: -0.875 Folding energies... MFEI: -22.854 AMFE: -0.565 GC content %: 40.421 | |
| Atauschii_AET2Gv21305600.9 AET2Gv21305600.9 |
High | No | 407 | OG0002356 | Get ORF Coding potential... Type: noncoding Potential: -1.330 Folding energies... MFEI: -22.310 AMFE: -0.544 GC content %: 41.032 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
