Atauschii AET2Gv21309500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv21309500 [ AET2Gv21309500] |
2D | 651197750 | 651201498 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv21309500.10 AET2Gv21309500.10 |
Low | No | 1144 | OG0000495 | Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -30.350 AMFE: -0.639 GC content %: 47.465 | |
| Atauschii_AET2Gv21309500.11 AET2Gv21309500.11 |
Low | No | 1415 | OG0000495 | Get ORF Coding potential... Type: noncoding Potential: -0.445 Folding energies... MFEI: -34.247 AMFE: -0.641 GC content %: 53.428 | |
| Atauschii_AET2Gv21309500.12 AET2Gv21309500.12 |
Low | No | 1093 | OG0000495 | Get ORF Coding potential... Type: noncoding Potential: -1.021 Folding energies... MFEI: -31.144 AMFE: -0.647 GC content %: 48.124 | |
| Atauschii_AET2Gv21309500.13 AET2Gv21309500.13 |
Low | No | 783 | OG0000495 | Get ORF Coding potential... Type: noncoding Potential: -0.481 Folding energies... MFEI: -30.715 AMFE: -0.645 GC content %: 47.637 | |
| Atauschii_AET2Gv21309500.14 AET2Gv21309500.14 |
High | No | 511 | OG0000495 | Get ORF Coding potential... Type: noncoding Potential: -1.273 Folding energies... MFEI: -29.863 AMFE: -0.633 GC content %: 47.162 | |
| Atauschii_AET2Gv21309500.15 AET2Gv21309500.15 |
Low | No | 1111 | OG0000495 | Get ORF Coding potential... Type: noncoding Potential: -0.879 Folding energies... MFEI: -32.781 AMFE: -0.619 GC content %: 52.925 | |
| Atauschii_AET2Gv21309500.16 AET2Gv21309500.16 |
Low | No | 1160 | OG0000495 | Get ORF Coding potential... Type: noncoding Potential: -0.883 Folding energies... MFEI: -31.983 AMFE: -0.620 GC content %: 51.552 | |
| Atauschii_AET2Gv21309500.17 AET2Gv21309500.17 |
Low | No | 1254 | OG0000495 | Get ORF Coding potential... Type: noncoding Potential: -0.890 Folding energies... MFEI: -31.587 AMFE: -0.612 GC content %: 51.595 | |
| Atauschii_AET2Gv21309500.18 AET2Gv21309500.18 |
Low | No | 841 | OG0000495 | Get ORF Coding potential... Type: noncoding Potential: -0.121 Folding energies... MFEI: -32.224 AMFE: -0.663 GC content %: 48.633 | |
| Atauschii_AET2Gv21309500.20 AET2Gv21309500.20 |
Low | No | 1129 | OG0000495 | Get ORF Coding potential... Type: noncoding Potential: -0.676 Folding energies... MFEI: -32.843 AMFE: -0.596 GC content %: 55.093 | |
| Atauschii_AET2Gv21309500.21 AET2Gv21309500.21 |
Low | No | 825 | OG0000495 | Get ORF Coding potential... Type: noncoding Potential: -0.490 Folding energies... MFEI: -36.958 AMFE: -0.654 GC content %: 56.485 | |
| Atauschii_AET2Gv21309500.22 AET2Gv21309500.22 |
High | No | 348 | OG0000495 | Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -24.483 AMFE: -0.626 GC content %: 39.080 | |
| Atauschii_AET2Gv21309500.23 AET2Gv21309500.23 |
Low | No | 1370 | OG0000495 | Get ORF Coding potential... Type: noncoding Potential: -0.832 Folding energies... MFEI: -29.701 AMFE: -0.613 GC content %: 48.467 | |
| Atauschii_AET2Gv21309500.25 AET2Gv21309500.25 |
Low | No | 585 | OG0000495 | Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -30.444 AMFE: -0.625 GC content %: 48.718 | |
| Atauschii_AET2Gv21309500.27 AET2Gv21309500.27 |
Low | No | 555 | OG0071840 | Get ORF Coding potential... Type: noncoding Potential: -0.435 Folding energies... MFEI: -37.333 AMFE: -0.604 GC content %: 61.802 | |
| Atauschii_AET2Gv21309500.3 AET2Gv21309500.3 |
Low | No | 1110 | OG0000495 | Get ORF Coding potential... Type: noncoding Potential: -1.132 Folding energies... MFEI: -30.649 AMFE: -0.658 GC content %: 46.577 | |
| Atauschii_AET2Gv21309500.4 AET2Gv21309500.4 |
Low | No | 1078 | OG0000495 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -31.558 AMFE: -0.659 GC content %: 47.866 | |
| Atauschii_AET2Gv21309500.5 AET2Gv21309500.5 |
Low | No | 1256 | OG0000495 | Get ORF Coding potential... Type: noncoding Potential: -0.801 Folding energies... MFEI: -33.232 AMFE: -0.649 GC content %: 51.194 | |
| Atauschii_AET2Gv21309500.6 AET2Gv21309500.6 |
Low | No | 1351 | OG0000495 | Get ORF Coding potential... Type: noncoding Potential: -0.815 Folding energies... MFEI: -32.687 AMFE: -0.637 GC content %: 51.295 | |
| Atauschii_AET2Gv21309500.7 AET2Gv21309500.7 |
Low | No | 1433 | OG0000495 | Get ORF Coding potential... Type: noncoding Potential: -0.684 Folding energies... MFEI: -32.910 AMFE: -0.628 GC content %: 52.408 | |
| Atauschii_AET2Gv21309500.9 AET2Gv21309500.9 |
Low | No | 1023 | OG0000495 | Get ORF Coding potential... Type: noncoding Potential: -0.503 Folding energies... MFEI: -26.373 AMFE: -0.588 GC content %: 44.868 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv21309500.21 | SwissProt | 2021-04-01 | Q8H0W1 | 3.87e-9 |
| Atauschii_AET2Gv21309500.15 | SwissProt | 2021-04-01 | Q8H0W1 | 6.49e-5 |
| Atauschii_AET2Gv21309500.5 | SwissProt | 2021-04-01 | Q8H0W1 | 7.62e-6 |
| Atauschii_AET2Gv21309500.23 | SwissProt | 2021-04-01 | Q8H0W1 | 1.05e-7 |
| Atauschii_AET2Gv21309500.16 | SwissProt | 2021-04-01 | Q8H0W1 | 1.03e-8 |
| Atauschii_AET2Gv21309500.6 | SwissProt | 2021-04-01 | Q8H0W1 | 1.59e-5 |
| Atauschii_AET2Gv21309500.10 | SwissProt | 2021-04-01 | Q8H0W1 | 1.27e-5 |
| Atauschii_AET2Gv21309500.25 | SwissProt | 2021-04-01 | Q8H0W1 | 2.59e-6 |
| Atauschii_AET2Gv21309500.17 | SwissProt | 2021-04-01 | Q8H0W1 | 9.92e-9 |
| Atauschii_AET2Gv21309500.11 | SwissProt | 2021-04-01 | Q8H0W1 | 4.08e-14 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
