Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv20000800 [ AET3Gv20000800] |
3D | 56740 | 59261 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv20000800.1 AET3Gv20000800.1 |
Low | No | 808 | OG0071843 | Get ORF Coding potential... Type: coding Potential: 0.722 Folding energies... MFEI: -26.819 AMFE: -0.604 GC content %: 44.431 | |
Atauschii_AET3Gv20000800.3 AET3Gv20000800.3 |
Low | No | 633 | OG0071844 | Get ORF Coding potential... Type: coding Potential: 0.343 Folding energies... MFEI: -33.175 AMFE: -0.600 GC content %: 55.292 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET3Gv20000800.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |