Atauschii AET3Gv20048100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20048100 [ AET3Gv20048100] |
3D | 8127263 | 8133983 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20048100.1 AET3Gv20048100.1 |
High | No | 564 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -0.680 Folding energies... MFEI: -41.968 AMFE: -0.584 GC content %: 71.809 | |
| Atauschii_AET3Gv20048100.10 AET3Gv20048100.10 |
High | No | 2997 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.225 Folding energies... MFEI: -26.780 AMFE: -0.662 GC content %: 40.474 | |
| Atauschii_AET3Gv20048100.11 AET3Gv20048100.11 |
Low | No | 2260 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -29.345 AMFE: -0.664 GC content %: 44.204 | |
| Atauschii_AET3Gv20048100.12 AET3Gv20048100.12 |
Low | No | 1564 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -0.838 Folding energies... MFEI: -31.279 AMFE: -0.659 GC content %: 47.442 | |
| Atauschii_AET3Gv20048100.13 AET3Gv20048100.13 |
Low | No | 1553 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -31.623 AMFE: -0.665 GC content %: 47.521 | |
| Atauschii_AET3Gv20048100.14 AET3Gv20048100.14 |
High | No | 1475 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -0.750 Folding energies... MFEI: -31.173 AMFE: -0.668 GC content %: 46.644 | |
| Atauschii_AET3Gv20048100.15 AET3Gv20048100.15 |
High | No | 2252 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.045 Folding energies... MFEI: -27.726 AMFE: -0.664 GC content %: 41.785 | |
| Atauschii_AET3Gv20048100.16 AET3Gv20048100.16 |
High | No | 2927 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -27.055 AMFE: -0.665 GC content %: 40.690 | |
| Atauschii_AET3Gv20048100.17 AET3Gv20048100.17 |
High | No | 1497 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.019 Folding energies... MFEI: -32.191 AMFE: -0.670 GC content %: 48.029 | |
| Atauschii_AET3Gv20048100.18 AET3Gv20048100.18 |
High | No | 2515 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -29.507 AMFE: -0.683 GC content %: 43.221 | |
| Atauschii_AET3Gv20048100.19 AET3Gv20048100.19 |
High | No | 2549 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -28.403 AMFE: -0.669 GC content %: 42.448 | |
| Atauschii_AET3Gv20048100.2 AET3Gv20048100.2 |
High | No | 2347 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -0.821 Folding energies... MFEI: -33.208 AMFE: -0.652 GC content %: 50.916 | |
| Atauschii_AET3Gv20048100.20 AET3Gv20048100.20 |
High | No | 1506 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -0.833 Folding energies... MFEI: -31.740 AMFE: -0.664 GC content %: 47.809 | |
| Atauschii_AET3Gv20048100.21 AET3Gv20048100.21 |
High | No | 2097 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -29.714 AMFE: -0.671 GC content %: 44.301 | |
| Atauschii_AET3Gv20048100.22 AET3Gv20048100.22 |
High | No | 2177 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -0.845 Folding energies... MFEI: -29.545 AMFE: -0.678 GC content %: 43.592 | |
| Atauschii_AET3Gv20048100.23 AET3Gv20048100.23 |
High | No | 1998 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -29.895 AMFE: -0.665 GC content %: 44.945 | |
| Atauschii_AET3Gv20048100.24 AET3Gv20048100.24 |
High | No | 2504 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -0.824 Folding energies... MFEI: -28.259 AMFE: -0.664 GC content %: 42.532 | |
| Atauschii_AET3Gv20048100.25 AET3Gv20048100.25 |
High | No | 2481 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -27.344 AMFE: -0.657 GC content %: 41.636 | |
| Atauschii_AET3Gv20048100.26 AET3Gv20048100.26 |
High | No | 1461 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -31.759 AMFE: -0.668 GC content %: 47.570 | |
| Atauschii_AET3Gv20048100.27 AET3Gv20048100.27 |
High | No | 1483 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -32.036 AMFE: -0.665 GC content %: 48.146 | |
| Atauschii_AET3Gv20048100.28 AET3Gv20048100.28 |
High | No | 2244 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -28.668 AMFE: -0.666 GC content %: 43.048 | |
| Atauschii_AET3Gv20048100.29 AET3Gv20048100.29 |
High | No | 2766 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -26.772 AMFE: -0.667 GC content %: 40.130 | |
| Atauschii_AET3Gv20048100.3 AET3Gv20048100.3 |
High | No | 573 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -34.415 AMFE: -0.618 GC content %: 55.672 | |
| Atauschii_AET3Gv20048100.30 AET3Gv20048100.30 |
High | No | 1860 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -30.005 AMFE: -0.664 GC content %: 45.161 | |
| Atauschii_AET3Gv20048100.31 AET3Gv20048100.31 |
High | No | 2101 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -0.875 Folding energies... MFEI: -29.581 AMFE: -0.660 GC content %: 44.788 | |
| Atauschii_AET3Gv20048100.32 AET3Gv20048100.32 |
High | No | 1870 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -0.861 Folding energies... MFEI: -29.802 AMFE: -0.663 GC content %: 44.920 | |
| Atauschii_AET3Gv20048100.33 AET3Gv20048100.33 |
High | No | 2084 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -0.874 Folding energies... MFEI: -29.765 AMFE: -0.662 GC content %: 44.962 | |
| Atauschii_AET3Gv20048100.34 AET3Gv20048100.34 |
High | No | 1473 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -31.331 AMFE: -0.654 GC content %: 47.929 | |
| Atauschii_AET3Gv20048100.35 AET3Gv20048100.35 |
High | No | 1716 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -29.592 AMFE: -0.665 GC content %: 44.522 | |
| Atauschii_AET3Gv20048100.37 AET3Gv20048100.37 |
High | No | 1380 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -28.051 AMFE: -0.655 GC content %: 42.826 | |
| Atauschii_AET3Gv20048100.38 AET3Gv20048100.38 |
High | No | 1957 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -0.867 Folding energies... MFEI: -28.901 AMFE: -0.667 GC content %: 43.332 | |
| Atauschii_AET3Gv20048100.39 AET3Gv20048100.39 |
High | No | 1553 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -31.359 AMFE: -0.678 GC content %: 46.233 | |
| Atauschii_AET3Gv20048100.4 AET3Gv20048100.4 |
High | No | 1450 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -31.069 AMFE: -0.675 GC content %: 46.000 | |
| Atauschii_AET3Gv20048100.40 AET3Gv20048100.40 |
High | No | 2272 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -0.849 Folding energies... MFEI: -28.213 AMFE: -0.677 GC content %: 41.681 | |
| Atauschii_AET3Gv20048100.41 AET3Gv20048100.41 |
High | No | 2438 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -28.056 AMFE: -0.665 GC content %: 42.207 | |
| Atauschii_AET3Gv20048100.42 AET3Gv20048100.42 |
High | No | 2333 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -0.885 Folding energies... MFEI: -27.934 AMFE: -0.671 GC content %: 41.620 | |
| Atauschii_AET3Gv20048100.43 AET3Gv20048100.43 |
High | No | 1256 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -0.961 Folding energies... MFEI: -32.484 AMFE: -0.671 GC content %: 48.408 | |
| Atauschii_AET3Gv20048100.44 AET3Gv20048100.44 |
High | No | 994 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -0.763 Folding energies... MFEI: -30.664 AMFE: -0.658 GC content %: 46.579 | |
| Atauschii_AET3Gv20048100.45 AET3Gv20048100.45 |
High | No | 1731 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -0.852 Folding energies... MFEI: -26.176 AMFE: -0.654 GC content %: 40.035 | |
| Atauschii_AET3Gv20048100.46 AET3Gv20048100.46 |
High | No | 959 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -0.823 Folding energies... MFEI: -26.611 AMFE: -0.636 GC content %: 41.814 | |
| Atauschii_AET3Gv20048100.47 AET3Gv20048100.47 |
High | No | 1833 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -0.859 Folding energies... MFEI: -26.268 AMFE: -0.662 GC content %: 39.662 | |
| Atauschii_AET3Gv20048100.5 AET3Gv20048100.5 |
High | No | 1247 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -32.670 AMFE: -0.664 GC content %: 49.238 | |
| Atauschii_AET3Gv20048100.6 AET3Gv20048100.6 |
High | No | 1295 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -32.749 AMFE: -0.663 GC content %: 49.421 | |
| Atauschii_AET3Gv20048100.7 AET3Gv20048100.7 |
High | No | 1833 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -29.875 AMFE: -0.668 GC content %: 44.735 | |
| Atauschii_AET3Gv20048100.8 AET3Gv20048100.8 |
High | No | 2782 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -0.864 Folding energies... MFEI: -27.699 AMFE: -0.668 GC content %: 41.481 | |
| Atauschii_AET3Gv20048100.9 AET3Gv20048100.9 |
High | No | 2276 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -29.525 AMFE: -0.677 GC content %: 43.585 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20048100.13 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET3Gv20048100.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET3Gv20048100.12 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
