Atauschii AET3Gv20092300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20092300 [ AET3Gv20092300] |
3D | 18160026 | 18433894 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20092300.1 AET3Gv20092300.1 |
High | No | 338 | OG0071998 | Get ORF Coding potential... Type: noncoding Potential: -0.856 Folding energies... MFEI: -28.846 AMFE: -0.606 GC content %: 47.633 | |
| Atauschii_AET3Gv20092300.13 AET3Gv20092300.13 |
High | No | 1368 | OG0001153 | Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -25.782 AMFE: -0.663 GC content %: 38.889 | |
| Atauschii_AET3Gv20092300.14 AET3Gv20092300.14 |
High | No | 332 | OG0001153 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -27.500 AMFE: -0.652 GC content %: 42.169 | |
| Atauschii_AET3Gv20092300.15 AET3Gv20092300.15 |
High | No | 1318 | OG0001153 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -27.117 AMFE: -0.693 GC content %: 39.150 | |
| Atauschii_AET3Gv20092300.16 AET3Gv20092300.16 |
High | No | 1152 | OG0001153 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -26.276 AMFE: -0.686 GC content %: 38.281 | |
| Atauschii_AET3Gv20092300.17 AET3Gv20092300.17 |
High | No | 957 | OG0001153 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -27.576 AMFE: -0.713 GC content %: 38.662 | |
| Atauschii_AET3Gv20092300.18 AET3Gv20092300.18 |
High | No | 1664 | OG0001153 | Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -25.841 AMFE: -0.687 GC content %: 37.620 | |
| Atauschii_AET3Gv20092300.19 AET3Gv20092300.19 |
High | No | 2001 | OG0001153 | Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -26.662 AMFE: -0.705 GC content %: 37.831 | |
| Atauschii_AET3Gv20092300.23 AET3Gv20092300.23 |
High | No | 1141 | OG0001153 | Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -26.854 AMFE: -0.659 GC content %: 40.754 | |
| Atauschii_AET3Gv20092300.25 AET3Gv20092300.25 |
High | No | 1913 | OG0001153 | Get ORF Coding potential... Type: noncoding Potential: -1.023 Folding energies... MFEI: -24.219 AMFE: -0.654 GC content %: 37.010 | |
| Atauschii_AET3Gv20092300.27 AET3Gv20092300.27 |
High | No | 566 | OG0001153 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -24.435 AMFE: -0.599 GC content %: 40.813 | |
| Atauschii_AET3Gv20092300.3 AET3Gv20092300.3 |
High | No | 1950 | OG0001153 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -26.774 AMFE: -0.708 GC content %: 37.795 | |
| Atauschii_AET3Gv20092300.4 AET3Gv20092300.4 |
High | No | 1074 | OG0001153 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -27.058 AMFE: -0.649 GC content %: 41.713 | |
| Atauschii_AET3Gv20092300.9 AET3Gv20092300.9 |
High | No | 490 | OG0001153 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -23.959 AMFE: -0.596 GC content %: 40.204 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
