GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv20117400 [ AET3Gv20117400]	3D	22858462	22864612	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv20117400.3 AET3Gv20117400.3	High	No	334	OG0072014		Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -26.707 AMFE: -0.398 GC content %: 67.066
Atauschii_AET3Gv20117400.8 AET3Gv20117400.8	Low	No	982	OG0016131		Get ORF Coding potential... Type: noncoding Potential: -0.188 Folding energies... MFEI: -30.723 AMFE: -0.647 GC content %: 47.454
Atauschii_AET3Gv20117400.9 AET3Gv20117400.9	High	No	872	OG0016131		Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -30.126 AMFE: -0.644 GC content %: 46.789

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET3Gv20117400.8	SwissProt	2021-04-01	F4HWL3	1.04e-13

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).