GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv20119500 [ AET3Gv20119500]	3D	23292323	23296381	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv20119500.1 AET3Gv20119500.1	High	No	3698	OG0000142		Get ORF Coding potential... Type: noncoding Potential: -1.191 Folding energies... MFEI: -27.915 AMFE: -0.673 GC content %: 41.509
Atauschii_AET3Gv20119500.2 AET3Gv20119500.2	High	No	3948	OG0000142		Get ORF Coding potential... Type: noncoding Potential: -1.150 Folding energies... MFEI: -27.738 AMFE: -0.672 GC content %: 41.261
Atauschii_AET3Gv20119500.5 AET3Gv20119500.5	High	No	789	OG0000142		Get ORF Coding potential... Type: noncoding Potential: -0.929 Folding energies... MFEI: -27.858 AMFE: -0.626 GC content %: 44.487
Atauschii_AET3Gv20119500.6 AET3Gv20119500.6	High	No	899	OG0000142		Get ORF Coding potential... Type: noncoding Potential: -0.959 Folding energies... MFEI: -26.352 AMFE: -0.644 GC content %: 40.934
Atauschii_AET3Gv20119500.7 AET3Gv20119500.7	High	No	507	OG0000142		Get ORF Coding potential... Type: noncoding Potential: -0.998 Folding energies... MFEI: -27.337 AMFE: -0.611 GC content %: 44.773

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).