GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv20132700 [ AET3Gv20132700]	3D	27010117	27014970	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv20132700.1 AET3Gv20132700.1	Low	No	1021	OG0006874		Get ORF Coding potential... Type: noncoding Potential: -0.335 Folding energies... MFEI: -28.208 AMFE: -0.647 GC content %: 43.585
Atauschii_AET3Gv20132700.10 AET3Gv20132700.10	Low	No	877	OG0006874		Get ORF Coding potential... Type: noncoding Potential: -0.162 Folding energies... MFEI: -28.381 AMFE: -0.646 GC content %: 43.900
Atauschii_AET3Gv20132700.13 AET3Gv20132700.13	Low	No	976	OG0006874		Get ORF Coding potential... Type: noncoding Potential: -0.035 Folding energies... MFEI: -29.867 AMFE: -0.667 GC content %: 44.775
Atauschii_AET3Gv20132700.2 AET3Gv20132700.2	Low	No	1191	OG0006874		Get ORF Coding potential... Type: noncoding Potential: -0.344 Folding energies... MFEI: -28.052 AMFE: -0.654 GC content %: 42.905
Atauschii_AET3Gv20132700.5 AET3Gv20132700.5	Low	No	651	OG0006874		Get ORF Coding potential... Type: noncoding Potential: -0.230 Folding energies... MFEI: -28.694 AMFE: -0.642 GC content %: 44.700

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET3Gv20132700.2	SwissProt	2021-04-01	Q54MZ4	1.03e-7
Atauschii_AET3Gv20132700.5	SwissProt	2021-04-01	Q54MZ4	2.53e-7
Atauschii_AET3Gv20132700.1	SwissProt	2021-04-01	Q54MZ4	9.11e-8
Atauschii_AET3Gv20132700.10	SwissProt	2021-04-01	Q54MZ4	4.71e-8
Atauschii_AET3Gv20132700.13	SwissProt	2021-04-01	Q54MZ4	1.03e-4

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).