Atauschii AET3Gv20144400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20144400 [ AET3Gv20144400] |
3D | 30367526 | 30370293 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20144400.1 AET3Gv20144400.1 |
Low | No | 2478 | OG0000770 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -31.590 AMFE: -0.708 GC content %: 44.633 | |
| Atauschii_AET3Gv20144400.10 AET3Gv20144400.10 |
Low | No | 1300 | OG0000770 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -35.838 AMFE: -0.683 GC content %: 52.462 | |
| Atauschii_AET3Gv20144400.11 AET3Gv20144400.11 |
Low | No | 2242 | OG0000770 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -31.864 AMFE: -0.698 GC content %: 45.674 | |
| Atauschii_AET3Gv20144400.12 AET3Gv20144400.12 |
Low | No | 1828 | OG0000770 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -33.693 AMFE: -0.708 GC content %: 47.593 | |
| Atauschii_AET3Gv20144400.13 AET3Gv20144400.13 |
Low | No | 2437 | OG0000770 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -31.682 AMFE: -0.713 GC content %: 44.440 | |
| Atauschii_AET3Gv20144400.14 AET3Gv20144400.14 |
Low | No | 1278 | OG0000770 | Get ORF Coding potential... Type: noncoding Potential: -1.065 Folding energies... MFEI: -35.689 AMFE: -0.686 GC content %: 52.034 | |
| Atauschii_AET3Gv20144400.15 AET3Gv20144400.15 |
Low | No | 1604 | OG0000770 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -31.209 AMFE: -0.711 GC content %: 43.890 | |
| Atauschii_AET3Gv20144400.16 AET3Gv20144400.16 |
Low | No | 1530 | OG0000770 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -35.595 AMFE: -0.711 GC content %: 50.065 | |
| Atauschii_AET3Gv20144400.2 AET3Gv20144400.2 |
Low | No | 1840 | OG0000770 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -33.212 AMFE: -0.691 GC content %: 48.098 | |
| Atauschii_AET3Gv20144400.3 AET3Gv20144400.3 |
Low | No | 1999 | OG0000770 | Get ORF Coding potential... Type: noncoding Potential: -1.092 Folding energies... MFEI: -32.531 AMFE: -0.693 GC content %: 46.923 | |
| Atauschii_AET3Gv20144400.4 AET3Gv20144400.4 |
Low | No | 1800 | OG0000770 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -32.922 AMFE: -0.691 GC content %: 47.667 | |
| Atauschii_AET3Gv20144400.5 AET3Gv20144400.5 |
Low | No | 1290 | OG0000770 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -35.705 AMFE: -0.680 GC content %: 52.481 | |
| Atauschii_AET3Gv20144400.6 AET3Gv20144400.6 |
Low | No | 2447 | OG0000770 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -31.140 AMFE: -0.698 GC content %: 44.585 | |
| Atauschii_AET3Gv20144400.7 AET3Gv20144400.7 |
Low | No | 1506 | OG0000770 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -34.031 AMFE: -0.680 GC content %: 50.066 | |
| Atauschii_AET3Gv20144400.8 AET3Gv20144400.8 |
Low | No | 1905 | OG0000770 | Get ORF Coding potential... Type: noncoding Potential: -1.090 Folding energies... MFEI: -32.420 AMFE: -0.683 GC content %: 47.454 | |
| Atauschii_AET3Gv20144400.9 AET3Gv20144400.9 |
Low | No | 2421 | OG0000770 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -30.979 AMFE: -0.691 GC content %: 44.816 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20144400.13 | SwissProt | 2021-04-01 | Q6YYA3 | 8.72e-6 |
| Atauschii_AET3Gv20144400.9 | SwissProt | 2021-04-01 | Q6YYA3 | 8.67e-6 |
| Atauschii_AET3Gv20144400.4 | SwissProt | 2021-04-01 | Q6YYA3 | 5.07e-6 |
| Atauschii_AET3Gv20144400.14 | SwissProt | 2021-04-01 | Q6YYA3 | 3.17e-6 |
| Atauschii_AET3Gv20144400.1 | SwissProt | 2021-04-01 | Q6YYA3 | 8.94e-6 |
| Atauschii_AET3Gv20144400.5 | SwissProt | 2021-04-01 | Q6YYA3 | 1.0e-3 |
| Atauschii_AET3Gv20144400.15 | SwissProt | 2021-04-01 | Q6YYA3 | 2.4e-6 |
| Atauschii_AET3Gv20144400.10 | SwissProt | 2021-04-01 | Q6YYA3 | 1.0e-3 |
| Atauschii_AET3Gv20144400.6 | SwissProt | 2021-04-01 | Q6YYA3 | 8.78e-6 |
| Atauschii_AET3Gv20144400.16 | SwissProt | 2021-04-01 | Q6YYA3 | 3.91e-6 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
