GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv20197700 [ AET3Gv20197700]	3D	48753275	48757072	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv20197700.10 AET3Gv20197700.10	High	No	386	OG0072146		Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -21.917 AMFE: -0.557 GC content %: 39.378
Atauschii_AET3Gv20197700.11 AET3Gv20197700.11	High	No	778	OG0016147		Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -25.630 AMFE: -0.595 GC content %: 43.059
Atauschii_AET3Gv20197700.12 AET3Gv20197700.12	High	No	454	OG0016147		Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -23.106 AMFE: -0.530 GC content %: 43.612
Atauschii_AET3Gv20197700.5 AET3Gv20197700.5	High	No	626	OG0016148		Get ORF Coding potential... Type: noncoding Potential: -0.447 Folding energies... MFEI: -42.412 AMFE: -0.683 GC content %: 62.141

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).